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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGTGAGCACATTTCCTCAGATACTGAAGTTCATCTTGCTGTGACGCCACTTCAACCTGTTGTGTTCTTTGGATTCCCAAAACGAATGAGTGTCACAGgttgggttatcagttcatgagttctcctatatgagtaggtgtgctggtttattttaccgattgactgtatttgttcttttctgtag

Basic information

species Arabidopsis thaliana
transcript AT3G50590.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G10590.1 (Glycine max), 5'ss of exon 3
AGGAGTGAGCACATTTCCTCAGATACTGAAGTTCATCTTGCTGTGACGCCACTTCAACCTGTTGTGTTCTTTGGATTCCCAAAACGAATGAGTGTCACAGgttgggttatcagttcatgagttctcctatatgagtaggtgtgctg--gtttattt-----taccgattgactgtatt---tgttcttttctgtag--------
| ||  ||||| ||||| || ||||| ||||||||| | ||| |||| ||||| |||||||||||||| ||||| || |  |||||||||||||| ||||||||| |     ||| || |  | |  || || | |  || || ||  ||||  ||     |   |||    ||| ||   | |   ||| || |         
AAGACAGAGCAAATTTCTTCTGATACAGAAGTTCATATGGCTTTGACCCCACTACAACCTGTTGTGTTTTTTGGGTTTCATAAACGAATGAGTGTGACAGgttggctc--tggtttatcatatgtg-tagataaatgtgtttgttgtagtttgattactaatggtgatgatttgtgttaaatatctgtttttgcataaatgaag

upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA17G20310.1 (Glycine max), 5'ss of exon 3
AGGAGTGAGCACATTTCCTCAGATACTGAAGTTCATCTTGCTGTGACGCCACTTCAACCTGTTGTGTTCTTTGGATTCCCAAAACGAATGAGTGTCACAGgttgggt-tatcagttcatgagttctcctatatgagta----ggtgtgctggtttattttaccgattgactgtatttgttcttttctgtag--------
| ||  ||||| ||||  || ||||| ||||||||| | ||| |||| ||||| |||||||||||||| ||||| || |  |||||||||||||| ||||||||| | | |    ||||| ||      || ||  |      || || |   | ||  |   ||||     ||  | |   |||||| |         
AAGACAGAGCAAATTTTTTCTGATACAGAAGTTCATATGGCTTTGACCCCACTACAACCTGTTGTGTTTTTTGGGTTTCATAAACGAATGAGTGTGACAGgttggctctgttttatcatgtgtagataaatgtgtttgttgtagtttgattactaatggtgatgatttttgttaaatatctgtttctgcataaatgaag

upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G39110.1 (Glycine max), 5'ss of exon 3
AGGAGTGAGCACATTTCCTCAGATACTGAAGTTCATCTTGCTGTGACGCCACTTCAACCTGTTGTGTTCTTTGGATTCCCAAAACGAATGAGTGTCACAGgttgggttatcagttcatgagttct---cctatatgagtaggtgt-gctggtttattttaccga--ttgactgtatttgttct-tttctgtag--------------
| ||  ||||| ||||| || ||||| ||||||||||| ||  |||| ||||| ||| || ||||||| ||||||||||  |||||  ||||||| ||||||||| |      ||  | |  | |     |||| | |    ||| ||  |||   || ||  |  ||||   | ||||  || | |||||                
AAGACCGAGCAAATTTCTTCTGATACAGAAGTTCATCTGGCATTGACCCCACTACAATCTATTGTGTTTTTTGGATTCCATAAACGGTTGAGTGTGACAGgttggatgtctgatttcttatctgtgaagttatacgtgctattgtcgccagttcgatt-actaatcttgagattttttgggctatatctgtttttgcacaaatgaag

upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv00s0379g00020.t01 (Vitis vinifera), 5'ss of exon 2
AGGAGTGAGCACATTTCCTCAGATACTGAAGTTCATCTTGCTGTGACGCCACTTCAACCTGTTGTGTTCTTTGGATTCCCAAAACGAATGAGTGTCACAGgttgggttatcagttcatg-agttctcctata-tgagtaggtgtgctggtttattttaccgattg-actgtatttgttcttttctgtag-----------------------------------------------------------------
||||  || || |||||  | ||||| ||||||||||||||| |||| || || |||||||||||||||||||| ||||    | | |||||||| ||||||| | |  | | ||| |  |||| || |  | ||| ||| | ||| | | |  ||     |||     || | |||| | |   |||                                                                  
AGGATGGAACAGATTTCTCCTGATACAGAAGTTCATCTTGCTTTGACACCTCTCCAACCTGTTGTGTTCTTTGGTTTCCACCGAAGGATGAGTGTAACAGgtttgat-gttacttcctatagttatcattcactgaatagttttgcagttatggttgttaaattttgaagtttctgttgtatcaagtacctgtgttctttatgtttttgtgcctagtagtgcttctaattcttgaattgtttcactgcatgaag