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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGCTACTTGAACCGCTTTTAATTGGATTTTCTACAATGCAACAAACATTTGAACAGAAAGTAGACCTTTCTGAAATATTGTATCAAATAACAACAAGgttaccccctttccttttttctttgcttacacgttgttacatatttaatgtcaaatactttggaataggtgtgcaggatacatcaatgagtttctttgtctctttccctagctatctttattgactgcattccatgctaactatattagcttctttttttatatatataatggctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G50590.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: Vv00s1501g00010.t01 (Vitis vinifera), 5'ss of exon 3
TTGGGCTACTTGAACCGCTTTTAATTGGATTTTCTACAATGCAACAAACATTTGAACAGAAAGTAGACCTTTCTGAAATATTGTATCAAATAACAACAAGgttaccccctttccttttttctttgctta-cacgttgttacat-----atttaatgtcaaatac-tttggaataggtgtgcaggatacatcaatgagtttctttgt-ctctttccctagctatctttattgactgcattccatgc-taactatattagcttctttttttatatatataat-ggctgcag
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TGGGGCTTCTTGAACCTCTTCTTATTGGTTTTGCCACAATGCAACAAAATTTTGAGCAGAAGCTTGACCTGTCAGAAATATTGTACCAAATAACATCAAGgtggtcttctttctgcctatataggtttggttttttgtggcatgcagaacttcattttatgaacatttcacctctggatgctctataagatataggattttggtgttctttctttccattttgccatattaaaatggttccatgcatgaaagtagtgacaactgacttgtaaggcttatccaaatgaag