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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTTTTCACCCAACACTAGAATGGATTTTTGTTGGAGATAGGAGGGGTACACTTTTAGCGTGGGATGTTTCAACTGAAAGACCTAATATGATTGGAATgtaagtcattttcgttgcttttagatttctgtcagctggcatgaaattgctatcccttttttttctcgcagcaattcattcttgtttgttatattttggaactgcag

Basic information

species Arabidopsis thaliana
transcript AT3G50590.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os09g24260.1 (Oryza sativa), 5'ss of exon 6
TTGCTTTTCACCCAACACTAGAATGGATTTTTGTTGGAGATAGGAGGGGTACACTTTTAGCGTGGGATGTTTCAACTGAAAGACCTAATATGATTGGAATgtaagt-cattttcgttgcttttagatttctgtcagctggcatgaaattgctatccctt-ttttttctcgcagcaattcattcttgt-ttgttatattttggaactgcag
|||  ||||| ||||| ||||| ||||| ||| |||| |||||  | || || || || || |||||||| ||||| || ||||| | ||||||||||||||||||  |||||       | ||   ||| |   |     |  | |    | ||| || ||| ||       ||||  |||||  | || | |||||            
TTGGATTTCATCCAACCCTAGAGTGGATATTTATTGGTGATAGAGGTGGCACTCTCTTGGCATGGGATGTATCAACGGAGAGACCAAGTATGATTGGAATgtaagtatatttttacattatatattgttcaggttgtaaaaacaagaccattttcctttgtttctttcttttccaatgtattctattattttgatattca----------

upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA17G20310.1 (Glycine max), 5'ss of exon 6
TTGCTTTTCACCCAACACTAGAATGGATTTTTGTTGGAGATAGGAGGGGTACACTTTTAGCGTGGGATGTTTCAACTGAAAGACCTAATATGATTGGAATgtaagtcattttcgttgcttttagatttctgtcagctggcatgaaattgctatcccttttttttctcgcagcaattcattcttgtttgttatattttgg--aactgcag---------------------------------------------------------------
|||| ||||| ||||| || ||||||||||||||||| ||| |  | ||||||||  | |  |||||||| |||||||| ||||||| |||||||||||||| |||    ||   |  |  |  | || | ||   |  || ||    |   |  |||  || ||  ||    |||  || ||  ||  |||| | |||  |  || |                                                                
TTGCATTTCATCCAACTCTGGAATGGATTTTTGTTGGGGATCGACGAGGTACACTGCTGGTATGGGATGTATCAACTGAGAGACCTAGTATGATTGGAATgtgagtgtaatttacttataatctagttttttcttgtaccacgactgagacttggcttcattgtca-gctatgatttcttatttgttactatactgtggtcatttgtaaatatttgagtttaggcttgttaatttggttatatctgatcattttttgttattgaaatttcag

upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G39110.1 (Glycine max), 5'ss of exon 6
TTGCTTTTCACCCAACACTAGAATGGATTTTTGTTGGAGATAGGAGGGGTACACTTTTAGCGTGGGATGTTTCAACTGAAAGACCTAATATGATTGGAATgtaagtcattttcgttgcttttagatttctgtcagctggca--tgaaa------------ttgctatccctttt----------ttttctcgcagcaattcattcttgtttgttatattttggaactgcag------------------------------------
|||| ||||||||||| ||||||||||| |||||||| ||| |  | ||||||||  | || |||||||| |||||||| || |||| ||| |||||| ||| ||| | | | | |    ||    ||    ||  | | |  ||| |            | | ||||  ||||          |||||| ||||| | ||| |     |  ||| |||  ||      ||                                    
TTGCATTTCACCCAACTCTAGAATGGATATTTGTTGGTGATCGACGTGGTACACTACTGGCATGGGATGTATCAACTGAGAGGCCTAGTATCATTGGACTgtgagtaactgtggctatggttgagatttccccattttgtaactgagagaccttgtatcatggttatctattttgaatttgttgttttcttgcagccaatcactggaaatatttaaattgaggcttgttagtcttgggttctgatagttataatatttcattttcag

upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv00s0379g00020.t01 (Vitis vinifera), 5'ss of exon 5
TTGCTTTTCACCCAACACTAGAATGGATTTTTGTTGGAGATAGGAGGGGTACACTTTTAGCGTGGGATGTTTCAACTGAAAGACCTAATATGATTGGAATgtaagtcattttcgttgcttttagatttctgtcagctggcatgaaattgctatcccttttttttctcgcagcaattcattcttgtttgttatattttggaactgcag
|||||||||| |||||  | || |||||||||||||| |||||  ||||||||||  | || |||||||| |||||||||||||| |||||||| ||||||||||   |||  | |  | ||   |||   |      |||||  ||| |      || |  |  |  |   |||  ||| ||     | ||||| |  || | |  
TTGCTTTTCATCCAACTTTGGAGTGGATTTTTGTTGGTGATAGACGGGGTACACTACTTGCATGGGATGTATCAACTGAAAGACCCAATATGATAGGAATgtaagctctttatggttatcttttctttagttgtaaaagcatgtgatttcagagttttctggtcatttctataata-attgtt----ataatattcttaaaatcc--