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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttacaacttgtacaggtgtgtaatccagagaagctcaactaggggcttgtatcgttgagcaaacaggtcgggcccatctaatattgcattttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAGTTTGACGGCATTCTTGGTCTTGGATTTAAGGAGATTTCTGTAAACAGGG

Basic information

species Physcomitrella patens
transcript PP1S93_73V6.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S93_73V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os05g49200.2 (Oryza sativa), 3'ss of exon 3
agttacaacttgtacaggtgtgtaatccagagaagctcaactaggggcttgtatcgttgagcaaacaggtc-gggcccatctaatattgcattttc-----cgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAGTTTGACGGCATTCTTGGTCTTGGATTTAAGGAGATTTCTGTAAACAGGG
                  ||    ||  |     | | |  ||  |  |  ||||  ||| || |  |  |        | ||| ||||    |||       ||||  ||   ||||||||| |||||||| ||||| |||||  | || || || ||||| ||||||||||| ||||||||| |||| || || ||       |
---------------gtctgcactatatatctcggttaacttactgattattatctctgatcatattgccccaaatatttttaacattgttgcttcaccgctttagGAATTCATTGAAGCTACCAAGGAGCCAGGTCTTACTTTCATGGTTGCAAAATTTGATGGCATTCTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATG

upper sequence: PP1S93_73V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os01g44130.1 (Oryza sativa), 3'ss of exon 3
----agttacaacttgtacaggtgtgtaatccagagaagctcaactaggggcttgtatcgttgagcaaacaggtcgggcccatctaatattgcattttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAGTTTGACGGCATTCTTGGTCTTGGATTTAAGGAGATTTCTGTAAACAGGG
      |||  | ||    |  | | |  |       |     ||      ||   | |  | |     || ||    |  | || | |||   ||  |   |||  ||   |||||||||  | ||||||||||| || ||| | | ||| || ||||| ||||| ||||| |||||||||||||| ||||| ||  |  | |
gttcttttatcattttcgaaattatatgctt------aatctgacagaacactatgaactgtcaatgctcatgtta--ctgaactga-attatgttccc---agGAATTCATTGAAGCTACTCATGAGCCTGGTCTTACGTTTCTAGCAGCAAAATTTGATGGCATCCTTGGACTTGGATTTAAGGAAATTTCAGTTGAAGGTG

upper sequence: PP1S93_73V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ34433 (Selaginella moellendorffii), 3'ss of exon 3
agttacaacttgtacaggtgtgtaatccagagaagctcaactaggggcttgta---tcgttgagcaaacaggtcgggcccatctaatattgcattttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAGTTTGACGGCATTCTTGGTCTTGGATTTAAGGAGATTTCTGTAA-ACAGGG
                                              | ||| |   |  | || |  |  |      |  | ||  |  |     |   ||||   ||||| ||| | || |  |||||||| ||   |||  || | ||||||||||||||||||||||| |||||||| || | ||||||  |   ||||| 
----------------------------------------------gtttgcaaagttatcgatcttatggtcgctacataccttttgctatgcctgttgtagACATTTGCGGAATCAACAAGTGAGCCTGGGCTTGTTTTCCTCTTTGCCAAGTTTGACGGCATTCTTGGACTTGGATTCAAAGCGATTTCCATGGGACAGG-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208394252|gb|DC933920.1|DC933920
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGACGGAGCCTGGTCTCACTTTTGTCGTANCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|208356135|gb|DC902213.1|DC902213
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTANCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|100443113|gb|BY981739.1|BY981739
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGGAGCTACGAAGG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGG
EST: gi|100401523|gb|BY954573.1|BY954573
EST:     CTTGAGTNCA-GACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: CTTGAGT-CAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|18327738|gb|BJ159741.1|BJ159741
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCT
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCT
EST: gi|162248590|gb|FC425366.1|FC425366
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTA
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTA
EST: gi|100365835|gb|BY967170.1|BY967170
EST:     TGAGTCAAGACGATGTCACACTTGGGTGATCTCACGGTGAAAAGGC-AG
genomic: TGAGTCAAGACGATGTCACACTTGG-TGATCTCACGGTGAAA-GGCCAG
EST: gi|100359537|gb|BY947032.1|BY947032
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCNAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|100409102|gb|BY991858.1|BY991858
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|100442060|gb|BY962953.1|BY962953
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCA
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCA
EST: gi|100408544|gb|BY974184.1|BY974184
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|162157639|gb|FC332961.1|FC332961
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|162153928|gb|FC329435.1|FC329435
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|100358471|gb|BY983922.1|BY983922
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAG
EST: gi|162231957|gb|FC409031.1|FC409031
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|100367681|gb|BY984765.1|BY984765
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCTAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|162180470|gb|FC356112.1|FC356112
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|208391424|gb|DC937572.1|DC937572
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|100416581|gb|BY975456.1|BY975456
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGGCAG                         GTGTTTGCTGGAGCTACGAAAGAGCCTGGTCTCACTT
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTT
EST: gi|67569734|gb|BJ942558.1|BJ942558
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|67719530|gb|BJ969789.1|BJ969789
EST:     TCTTGAGTCAAGACNATGTCACACTTGGTGATCTCACGGNGAAAGGCCAG                         GTGTTTGCTGAANCTACNAANGANCCTGGNCTCACTTTTGTCGNANCCAAN
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|100367922|gb|BY948157.1|BY948157
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|67712683|gb|BJ966132.1|BJ966132
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTA
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTA
EST: gi|67718260|gb|BJ968519.1|BJ968519
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|162274216|gb|FC449976.1|FC449976
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|162185057|gb|FC362503.1|FC362503
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|100358422|gb|BY983897.1|BY983897
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAANGAGCCTGGTCTCACTTTTGTCGTA
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTA
EST: gi|162188198|gb|FC363964.1|FC363964
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|208361291|gb|DC930330.1|DC930330
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTANCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|162182309|gb|FC357180.1|FC357180
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|100388408|gb|BY952010.1|BY952010
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|162266083|gb|FC442768.1|FC442768
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|162277812|gb|FC454275.1|FC454275
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|100446136|gb|CJ970435.1|CJ970435
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|100387632|gb|BY951632.1|BY951632
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|67508427|gb|BJ941294.1|BJ941294
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|100446181|gb|CJ970480.1|CJ970480
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|208356996|gb|DC930026.1|DC930026
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|162255640|gb|FC431638.1|FC431638
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|162174833|gb|FC351625.1|FC351625
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|162262898|gb|FC439291.1|FC439291
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|162192060|gb|FC367273.1|FC367273
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|162192780|gb|FC370138.1|FC370138
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG
EST: gi|100410404|gb|BY992089.1|BY992089
EST:     TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG                         GTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCCAG
genomic: TCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAGgtgagtacaa ... ttttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcttgtatcgttgagcaaacaggtcgggcccatctaatattgcattttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAGTTTGACGGCATTCTTGGTCTTGGATTTAAGGAGATTTCTGTAAACAGGG
                                atctaat  putative branch site (score: 3)
                                           cattttcc  putative PPT
                                   taatattgcatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agttacaacttgtacaggtgtgtaatccagagaagctcaactaggggcttgtatcgttgagcaaacaggtcgggcccatctaatattgcattttccgtagGTGTTTGCTGAAGCTACGAAGGAGCCTGGTCTCACTTTTGTCGTAGCCAAGTTTGACGGCATTCTTGGTCTTGGATTTAAGGAGATTTCTGTAAACAGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT