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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtttacaagttttctatttgtctaagttttagcatattgtttctgaaacttcagcacaaaaaaacatctatggttgcccagaaccttgattgcttatttgctaaatttatattttaatatgcttactataagtatctctgcacgtgcagGTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCTGATCCAGTTGATGTGTATTACGAATCTGTGGGCAGTGACAAAAACACAC

Basic information

species Zea mays
transcript GRMZM2G158627_T03
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40334151|gb|CK368221.1|CK368221
EST:     TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAG                         GTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
genomic: TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAGgtagtttaca ... gcacgtgcagGTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
EST: gi|67025030|gb|CO453779.1|CO453779
EST:     TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAG                         GTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
genomic: TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAGgtagtttaca ... gcacgtgcagGTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
EST: gi|32933872|gb|CF038684.1|CF038684
EST:     TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAG                         GTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
genomic: TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAGgtagtttaca ... gcacgtgcagGTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
EST: gi|45568479|gb|CK986083.1|CK986083
EST:     TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAG                         GTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
genomic: TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAGgtagtttaca ... gcacgtgcagGTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
EST: gi|74240586|gb|DT648500.1|DT648500
EST:     TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAG                         GTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
genomic: TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAGgtagtttaca ... gcacgtgcagGTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
EST: gi|32934686|gb|CF039498.1|CF039498
EST:     TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAG                         GTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
genomic: TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAGgtagtttaca ... gcacgtgcagGTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
EST: gi|78022271|gb|DV490658.1|DV490658
EST:     CGAGCTGACCAGTCATT-TTTGAAGCTGGAGTGGCTCGAGAG                         GTTGTGAACACGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
genomic: CGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAGgtagtttaca ... gcacgtgcagGTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
EST: gi|32932327|gb|CF037139.1|CF037139
EST:     TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAG                         GTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
genomic: TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAGgtagtttaca ... gcacgtgcagGTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
EST: gi|211108629|gb|FL325826.1|FL325826
EST:     TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAG                         GTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
genomic: TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAGgtagtttaca ... gcacgtgcagGTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
EST: gi|71432888|gb|DR813938.1|DR813938
EST:     TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAG                         GTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
genomic: TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAGgtagtttaca ... gcacgtgcagGTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgctaaatttatattttaatatgcttactataagtatctctgcacgtgcagGTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCTGATCCAGTTGATGTGTATTACGAATCTGTGGGCAGTGACAAAAACACAC
                         tgcttac  putative branch site (score: 2)
                                        tctctgc  putative PPT
       taaatttatattttaa  TA-rich tract