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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgttcatctaaacattccattttgtgttattttagcagaatggcttctgacttaaatagttaaatgttcgattgattttgttacattgccagAGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGATCTTGCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCAC

Basic information

species Zea mays
transcript GRMZM2G158627_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158627_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g43760.1 (Oryza sativa), 3'ss of exon 16
gtaattgttcatctaaacattccattttgtgttattttagcagaatggcttctgacttaaatagttaaatgttcgattgattttgttacattgccagAGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGATCTTGCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCAC
|||||| || ||||||||  |  | | ||  |||||  | | | ||  ||| |||||| |         |||| ||||  ||||| | |||   |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| || ||||||||||| ||||||||||||||  | ||||||||||
gtaattctt-atctaaac-ctgtactatgctttattccacccgtattacttgtgacttca---------tgtt-gattttttttgcttcatgatcagAGAGATGAGCGTGTTGAGCAAAGTGTAAACAGAATGATGACCATCATTGATCTTGCCCGCAATATTCGTGAACGGCATAACAAAGCCTTGAAAACACCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22715593|gb|BU197851.1|BU197851
EST:     AATCTGAGGAGAGCATTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAG                         AGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGAT
genomic: AATCTGAGGAGAGCATTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAGgtaattgttc ... acattgccagAGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGAT
EST: gi|87156879|gb|DY401668.1|DY401668
EST:     AATCTGAGGAGAGCATTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAG                         AGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGAT
genomic: AATCTGAGGAGAGCATTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAGgtaattgttc ... acattgccagAGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGAT
EST: gi|26559569|gb|CA831804.1|CA831804
EST:     AATCTGAGGAGAGCCTTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAG                         AGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGAT
genomic: AATCTGAGGAGAGCATTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAGgtaattgttc ... acattgccagAGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatggcttctgacttaaatagttaaatgttcgattgattttgttacattgccagAGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGATCTTGCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCAC
              ttaaatagttaaatgt  TA-rich tract