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gtaagttataaccggttgatcaacacgatacttattttggaatatctttttcatgaatagtttattctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT
species | Zea mays |
transcript | GRMZM2G158627_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGEST: gi|67025030|gb|CO453779.1|CO453779
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCGCCAATTATGCCAAAAGAAATGEST: gi|32933872|gb|CF038684.1|CF038684
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAATGACAAAAACACACTAGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCGCCAATTATGCCAAAAGAAATGEST: gi|45568479|gb|CK986083.1|CK986083
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGEST: gi|74240586|gb|DT648500.1|DT648500
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGEST: gi|32934686|gb|CF039498.1|CF039498
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAATGACAAAAACACACTAGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCGCCAATTATGCCAAAAGAAATGEST: gi|60345148|gb|DN212121.1|DN212121
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGEST: gi|37373885|gb|CF623267.1|CF623267
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGEST: gi|78022271|gb|DV490658.1|DV490658
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCGCCAATTATGCCAAAAGAAATGEST: gi|32932327|gb|CF037139.1|CF037139
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAATGACAAAAACACACTAGAAGGGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCGCCAATTATGCCAAAAGAAATGEST: gi|211108629|gb|FL325826.1|FL325826
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGEST: gi|71432888|gb|DR813938.1|DR813938
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGEST: gi|60337676|gb|DN204649.1|DN204649
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGT--C-- -A-CAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
tcaacacgatacttattttggaatatctttttcatgaatagtttattctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT
tttattct CT-rich tract
ttattttggaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttataaccggttgatcaacacgatacttattttggaatatctttttcatgaatagtttattctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG