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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATATGCATTGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAGgtaagtcttgctgaattcagattacaaattgtgaactctacccatgcaggcactagctatttcacttttgatactgtgtggtcctgtggacagtccgagtaatgcatgcacgtactctgatgaaacag

Basic information

species Zea mays
transcript GRMZM2G158627_T03
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158627_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os06g43760.1 (Oryza sativa), 5'ss of exon 25
CTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATATGCATTGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAGgtaagtcttgctgaattcagattacaaattgtgaactctacccatgcaggcactagctatttcacttttgatactgtgtggtcctgtggacagtccgagtaatgcatgcacgtactctgatgaaacag
 |  | |||||||||||||||||||| |||||||| |||||||| | ||||||||||    | ||  |  |  ||   ||||| |||   |||||| | ||||| |    |   ||         | |  ||| |||   |   |   |    ||     ||  | ||     || |||  |  | || |  ||      ||   | |    |||| ||||| |||||
ATCTGTGAGGAGTCTCACAATGTACAAGACATGTCGTTTGTCATTTACATTGCAAGGGTTTCTCCAGTGGTCACAGATGATCTCCTTGTCCATGCCGCTGgtaaatacaaccttatctg------atagggtgtacttgtctattttcgttgttaatgtcttggcattct---ctttgttatattctgcatggt------aacataagtgtctactttgatggaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40334151|gb|CK368221.1|CK368221
EST:     TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAG                         GCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTC
genomic: TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAGgtaagtcttg ... gatgaaacagGCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTC
EST: gi|67025030|gb|CO453779.1|CO453779
EST:     TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAG                         GCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
genomic: TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAGgtaagtcttg ... gatgaaacagGCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
EST: gi|5499479|gb|AI855346.1|AI855346
EST:     TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAG                         GCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCT
genomic: TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAGgtaagtcttg ... gatgaaacagGCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCT
EST: gi|45568479|gb|CK986083.1|CK986083
EST:     TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAG                         GCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
genomic: TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAGgtaagtcttg ... gatgaaacagGCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
EST: gi|74240586|gb|DT648500.1|DT648500
EST:     TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAA                         GCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
genomic: TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAGgtaagtcttg ... gatgaaacagGCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
EST: gi|60345148|gb|DN212121.1|DN212121
EST:     TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAG                         GCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
genomic: TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAGgtaagtcttg ... gatgaaacagGCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
EST: gi|37373885|gb|CF623267.1|CF623267
EST:     TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAG                         GCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
genomic: TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAGgtaagtcttg ... gatgaaacagGCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
EST: gi|113702485|gb|EE679989.1|EE679989
EST:     TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAG                         GCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
genomic: TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAGgtaagtcttg ... gatgaaacagGCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
EST: gi|78022271|gb|DV490658.1|DV490658
EST:     TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAG                         GCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
genomic: TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAGgtaagtcttg ... gatgaaacagGCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
EST: gi|78109267|gb|DV527683.1|DV527683
EST:     CTTTCTCATGCCTCAG                         GCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
genomic: CTTTCTCATGCCTCAGgtaagtcttg ... gatgaaacagGCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
EST: gi|211108629|gb|FL325826.1|FL325826
EST:     GCAAGGTCCACCCCTATTTCTTGCACCATATCTTCTTTCTCATGCCTCAG                         GCAAAAGCAATCATGTGGAGGCGTTGAGGAGTATAT
genomic: GCAAGGTCCACCCCTATT-CTTGCACCAGATCTTCTTTCTCATGCCTCAGgtaagtcttg ... gatgaaacagGCAAAAGCAATCATGTGGAGGCGTTGAG-AGTATAT
EST: gi|71432888|gb|DR813938.1|DR813938
EST:     TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAA                         GCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
genomic: TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAGgtaagtcttg ... gatgaaacagGCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
EST: gi|60337676|gb|DN204649.1|DN204649
EST:     TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAG                         GCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC
genomic: TGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATGCCTCAGgtaagtcttg ... gatgaaacagGCAAAAGCAATCATGTGGAGGCGTTGAGAGTATATCTTCTGTCAAGGTCTC