Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGATCTTGCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCACTCAAgtatgtctaggcttccttcaatttttgcatgtgtatgttttctgtgatgatgtgaatcactttggcagattgttcttataatatgttcttaaagcatgaa...

Basic information

species Zea mays
transcript GRMZM2G158627_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158627_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g43760.1 (Oryza sativa), 5'ss of exon 17
ATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGATCTTGCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCACTCAAgtatgtctaggcttccttcaatttttgcatgtgtatgttttctgtgatgatgtgaatcactttggcagattgttcttataatatgttcttaaagcatgaa
||||||||||||||||||||||||| || ||| ||||||||||||||||||| || ||||||||||| ||||||||||||||  | ||||||||||| ||||||||  |   |  | | | || || | |    || |  |||      || |   | |         |   |||   |  |||  | |     ||||  
ATGAGCGTGTTGAGCAAAGTGTAAACAGAATGATGACCATCATTGATCTTGCCCGCAATATTCGTGAACGGCATAACAAAGCCTTGAAAACACCACTGAAgtatgttcatagtctcatgatttgtttcctaatgatttaatctagagatatttcgtttaggaaattgaaaatttcacgttgtataatatattgacatgtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22715593|gb|BU197851.1|BU197851
EST:     GCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCACTCAA                         GGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
genomic: GCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCACTCAAgtatgtctag ... tgagtttcagGGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
EST: gi|87156879|gb|DY401668.1|DY401668
EST:     GCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCACTCAA                         GGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
genomic: GCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCACTCAAgtatgtctag ... tgagtttcagGGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
EST: gi|74240586|gb|DT648500.1|DT648500
EST:     CTCTCAAAACACCACTCAA                         GGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
genomic: CTCTCAAAACACCACTCAAgtatgtctag ... tgagtttcagGGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
EST: gi|71432888|gb|DR813938.1|DR813938
EST:     AACACCACTCAA                         GGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
genomic: AACACCACTCAAgtatgtctag ... tgagtttcagGGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
EST: gi|26559569|gb|CA831804.1|CA831804
EST:     GCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCACTCAA                         GGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
genomic: GCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCACTCAAgtatgtctag ... tgagtttcagGGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG