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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccattaatatgctactttgtctatagtttggctaatctctttctgctaacatccctatattgcttttgttatag

Basic information

species Zea mays
transcript GRMZM2G158627_T03
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40334151|gb|CK368221.1|CK368221
EST:     CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG                         GCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
genomic: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccat ... tttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
EST: gi|67025030|gb|CO453779.1|CO453779
EST:     CAAGCGTCCTGAAAACATGTCGGAGAAGGAGATTGATGCTGCAGGAGATG                         GCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
genomic: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccat ... tttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
EST: gi|32933872|gb|CF038684.1|CF038684
EST:     CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG                         GTGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
genomic: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccat ... tttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
EST: gi|45568479|gb|CK986083.1|CK986083
EST:     CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG                         GCGACGTNTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
genomic: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccat ... tttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
EST: gi|74240586|gb|DT648500.1|DT648500
EST:     CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG                         GCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
genomic: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccat ... tttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
EST: gi|32934686|gb|CF039498.1|CF039498
EST:     CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG                         GTGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
genomic: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccat ... tttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
EST: gi|32932327|gb|CF037139.1|CF037139
EST:     CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG                         GTGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
genomic: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccat ... tttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
EST: gi|211108629|gb|FL325826.1|FL325826
EST:     CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG                         GCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
genomic: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccat ... tttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
EST: gi|71432888|gb|DR813938.1|DR813938
EST:     CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG                         GCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
genomic: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccat ... tttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccattaatatgctactttgtctatagtttggctaatctctttctgctaacatccctatattgcttttgttatag

- - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG