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gtttgttagactgaaacctatatgcgttgagtttgtctccattctgaagttacggaactgttttgctgtcatcaatcagacacattcatttcaagctttttttagtttttattaagttttggttctttattagtggatgctgactacatctacttcattccatgtagTATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCCTTGATGTATGCTTCTCTGCGAGCTGAACCTAATTTCAG
species | Zea mays |
transcript | GRMZM2G158627_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAG TATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATEST: gi|20208226|gb|BQ134315.1|BQ134315
genomic: TGCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAGgtttgttaga ... ttccatgtagTATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAAT
EST: CAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAG TATGTCATGGTAGGAAATCAATGTTAAGACTGACACTCCATGCAATGACCCEST: gi|87156879|gb|DY401668.1|DY401668
genomic: CAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAGgtttgttaga ... ttccatgtagTATGTCATGG-AGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCC
EST: TGCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAG TATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCCEST: gi|32933872|gb|CF038684.1|CF038684
genomic: TGCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAGgtttgttaga ... ttccatgtagTATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCC
EST: GCATCCAGACAATGAC-TTCTTGAAGACATAACTGGTAAACTAAAAGAG TATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCCEST: gi|74240586|gb|DT648500.1|DT648500
genomic: GCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAGgtttgttaga ... ttccatgtagTATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCC
EST: TGCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAG TATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCCEST: gi|32934686|gb|CF039498.1|CF039498
genomic: TGCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAGgtttgttaga ... ttccatgtagTATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCC
EST: TGCATCCAGACAATGACTTTCTTGAAGACATAACAGGTAAACTAAAAGAG TATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCCEST: gi|32932327|gb|CF037139.1|CF037139
genomic: TGCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAGgtttgttaga ... ttccatgtagTATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCC
EST: ATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAG TATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCCEST: gi|71432888|gb|DR813938.1|DR813938
genomic: ATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAGgtttgttaga ... ttccatgtagTATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCC
EST: TGCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAG TATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCCEST: gi|26559569|gb|CA831804.1|CA831804
genomic: TGCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAGgtttgttaga ... ttccatgtagTATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCC
EST: TGCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAG TATGTCATGGAGGAAATCAATGTT
genomic: TGCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAGgtttgttaga ... ttccatgtagTATGTCATGGAGGAAATCAATGTT
taagttttggttctttattagtggatgctgactacatctacttcattccatgtagTATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCCTTGATGTATGCTTCTCTGCGAGCTGAACCTAATTTCAG
tgctgac putative branch site (score: 2)
cttcattcc putative PPT
ttctttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttagactgaaacctatatgcgttgagtttgtctccattctgaagttacggaactgttttgctgtcatcaatcagacacattcatttcaagctttttttagtttttattaagttttggttctttattagtggatgctgactacatctacttcattccatgtagTATGTCATGGAGGAAATCAATGTTAAGACTGTCACTCCATGCAATGACCCCTTGATGTATGCTTCTCTGCGAGCTGAACCTAATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA