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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caacaggctgcacatgtctgatctacattttgagcctttcctgtaggatcacagaggcaatatgggcaatatttagagtttatcaaactgttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATATGCATTGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATG

Basic information

species Zea mays
transcript GRMZM2G158627_T03
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158627_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os06g43760.1 (Oryza sativa), 3'ss of exon 24
---------------------------------------------------------------------------------------caacaggctgcacatg-tctgatctacattttgagcctttcctgtaggatcacagaggcaatatgggcaatatttagagtttatcaaactgttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATATGCATTGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATG
                                                                                       || || | |  |     | | |||  ||      |   ||       | | | |  |  |  |        || |     | ||    ||| | || |||||||||  |  | |||||||||||||||||||| |||||||| |||||||| | ||||||||||    | ||  |  |  ||   ||||| |||   ||||
gtgagtttggatattctccctgtttcagtttactgttaactgacttttatctctatcaattggaggatttgatttttcttacatgaacaccaagttatatgcactatcatcaccaccaattggtgttgacacgagttgaaatggatataaaacatttaatctcattgtcatttgtctggt-ttggcagGTAATGATCTGTGAGGAGTCTCACAATGTACAAGACATGTCGTTTGTCATTTACATTGCAAGGGTTTCTCCAGTGGTCACAGATGATCTCCTTGTCCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40334151|gb|CK368221.1|CK368221
EST:     ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: gi|67025030|gb|CO453779.1|CO453779
EST:     ACGCACTTGGTTCGCCAATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: gi|32933872|gb|CF038684.1|CF038684
EST:     ACGCACTTGGTTCGCCAATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GTAATACTTGGCGAGGAGTCTCACAATGTAC
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTAC
EST: gi|45568479|gb|CK986083.1|CK986083
EST:     ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: gi|166516458|gb|EG268171.1|EG268171
EST:     AATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTG-CATA
genomic: AATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: gi|74240586|gb|DT648500.1|DT648500
EST:     ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: gi|32934686|gb|CF039498.1|CF039498
EST:     ACGCACTTGGTTCGCCAATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GCAATACTTGGCGAGGAGTCTCACAATGT
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGT
EST: gi|60345148|gb|DN212121.1|DN212121
EST:     ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: gi|37373885|gb|CF623267.1|CF623267
EST:     ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: gi|113702485|gb|EE679989.1|EE679989
EST:     ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GTATTACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: gi|78022271|gb|DV490658.1|DV490658
EST:     ACGCACTTGGTTCGCCAATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: gi|32932327|gb|CF037139.1|CF037139
EST:     ACGCACTTGGTTCGCCAATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GTAATACTTGGCGAGGAGTCTCACAATGT
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGT
EST: gi|211108629|gb|FL325826.1|FL325826
EST:     ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: gi|71432888|gb|DR813938.1|DR813938
EST:     ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: gi|60337676|gb|DN204649.1|DN204649
EST:     ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT                         GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatcacagaggcaatatgggcaatatttagagtttatcaaactgttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATATGCATTGCAAGGTCCACCCCTATTCTTGCACCAGATCTTCTTTCTCATG
                      aatatttagagtttat  TA-rich tract