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...cagtgcaacatgtttctattagatgtcacaaggtgcttatttcagttttctgcatcttcaccatttctacaaattttacttgtagacttcttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG
species | Zea mays |
transcript | GRMZM2G158627_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAG GTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATEST: gi|67025030|gb|CO453779.1|CO453779
genomic: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAGgtaatgttcc ... ttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAT
EST: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAG GTTGTCCGACAATTCAAGCGTCCTGAAAACATGTCGGAGAAGGAGATTGATEST: gi|32933872|gb|CF038684.1|CF038684
genomic: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAGgtaatgttcc ... ttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAT
EST: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAG GTCT-TCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAEST: gi|45568479|gb|CK986083.1|CK986083
genomic: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAGgtaatgttcc ... ttatttttagGT-TGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGA
EST: GTGGAGAGATTTCATTCTCCGGTCATTGC-TGAAGCTAGATGATATTAAG G-TGTTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAEST: gi|74240586|gb|DT648500.1|DT648500
genomic: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAGgtaatgttcc ... ttatttttagGTTG-TCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGA
EST: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAG GTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATEST: gi|32934686|gb|CF039498.1|CF039498
genomic: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAGgtaatgttcc ... ttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAT
EST: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAG GTCT-TCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAEST: gi|26456279|gb|CA827862.1|CA827862
genomic: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAGgtaatgttcc ... ttatttttagGT-TGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGA
EST: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAG GTTGTCCGACAATTCAAGCGTCCTGAAAACATGTCGGAGAAGGAGATTGATEST: gi|32932327|gb|CF037139.1|CF037139
genomic: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAGgtaatgttcc ... ttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAT
EST: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAG GTCT-TCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAEST: gi|211108629|gb|FL325826.1|FL325826
genomic: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAGgtaatgttcc ... ttatttttagGT-TGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGA
EST: TAGATGATATTAAG GTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATEST: gi|71432888|gb|DR813938.1|DR813938
genomic: TAGATGATATTAAGgtaatgttcc ... ttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAT
EST: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAG GTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAT
genomic: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAGgtaatgttcc ... ttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAT
ttttctgcatcttcaccatttctacaaattttacttgtagacttcttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG
cttcttattttt CT-rich tract
atttctacaaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtgcaacatgtttctattagatgtcacaaggtgcttatttcagttttctgcatcttcaccatttctacaaattttacttgtagacttcttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG