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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGTCTTTCCGAGTTCCTACTGTGGATGTTTCAGTCGTGGACCTTACTGTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAgtaagtggctggagcgttgcattgctgagtgataaccctaatgcccatcctttgatttgatccgatttttgatccattactcag

Basic information

species Vitis vinifera
transcript Vv01s0010g02460.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G071630_T02 (Zea mays), 5'ss of exon 8
GCATGTCTTTCCGAGTTCCTACTGTGGATGTTTCAGTCGTGGACCTTACTGTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAgtaagt---------ggctggagcgttgcattgctgagtgataa-----ccctaatgcccat--cctttgatttgatccgatttttgatccattactcag
| ||||||||||| || || ||||| |||||||| || || || || ||||||||||||||||| || ||||||||||| ||| |||| || ||  |||||| |||         |||  | ||          |||||| | |          |||  |||   |  |||||    |  |  | |  || |        
GAATGTCTTTCCGTGTCCCAACTGTCGATGTTTCTGTTGTTGATCTGACTGTTAGGCTTGAGAAGTCTGCCACCTATGATGAGATCAAGGCTGCGGTCAAgtgagttagctctccggccagggcaaatttcaaatgagtgttgaattgttttagatggtcatagtcactgattcttgcaaacatctcctctacag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406621|gb|CF212248.1|CF212248
EST:     GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAA                         GGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTG
genomic: GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAgtaagtggct ... cattactcagGGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTG
EST: gi|161720959|gb|FC070345.1|FC070345
EST:     GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAA                         GGAGGAGTCTGAAGGCAAACTC
genomic: GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAgtaagtggct ... cattactcagGGAGGAGTCTGAAGGCAAACTC
EST: gi|110703819|gb|EE080998.1|EE080998
EST:     GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAA                         GGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
genomic: GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAgtaagtggct ... cattactcagGGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
EST: gi|110384047|gb|EC948461.1|EC948461
EST:     GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAA                         GGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
genomic: GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAgtaagtggct ... cattactcagGGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
EST: gi|30302893|gb|CB979687.1|CB979687
EST:     GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAA                         GGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
genomic: GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAgtaagtggct ... cattactcagGGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
EST: gi|110363529|gb|EC927123.1|EC927123
EST:     GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAA                         GGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
genomic: GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAgtaagtggct ... cattactcagGGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
EST: gi|71886922|gb|DT035977.1|DT035977
EST:     TTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAA                         GGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
genomic: TTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAgtaagtggct ... cattactcagGGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
EST: gi|30134770|gb|CB920108.1|CB920108
EST:     GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAA                         GGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
genomic: GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAgtaagtggct ... cattactcagGGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
EST: gi|110373445|gb|EC937683.1|EC937683
EST:     GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAA                         GGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTA
genomic: GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAgtaagtggct ... cattactcagGGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTA
EST: gi|110707438|gb|EE083837.1|EE083837
EST:     GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAA                         GGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
genomic: GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAgtaagtggct ... cattactcagGGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
EST: gi|71856620|gb|DT005675.1|DT005675
EST:     GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAA                         GGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
genomic: GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAgtaagtggct ... cattactcagGGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
EST: gi|110371235|gb|EC935092.1|EC935092
EST:     GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAA                         GGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA
genomic: GTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAgtaagtggct ... cattactcagGGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGA