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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttcagccctcttgattaatcaagctacataaacccgagattatcattcgatacattgatagatttgaggcctctgcagccttagagtagagaggacatgaatcacatttggcattgccctttaattaatccctctaagctttgatgattgattgctgaaatcctttttctcgtatgttttactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGCTTGATGCTAAACAAACACAAAGCTTGATCCTCATTTTGTCTAATGTAGT

Basic information

species Vitis vinifera
transcript Vv01s0010g02460.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110703819|gb|EE080998.1|EE080998
EST:     GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG                         TTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
genomic: GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttca ... tactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
EST: gi|110384047|gb|EC948461.1|EC948461
EST:     GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG                         TTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
genomic: GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttca ... tactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
EST: gi|30302893|gb|CB979687.1|CB979687
EST:     GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG                         TTCACGGGTAATCGACTTGATCCCCCACATGGCTTCTGTTTAAGCTAAAGC
genomic: GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttca ... tactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
EST: gi|110363529|gb|EC927123.1|EC927123
EST:     GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG                         TTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
genomic: GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttca ... tactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
EST: gi|71886922|gb|DT035977.1|DT035977
EST:     GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG                         TTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
genomic: GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttca ... tactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
EST: gi|110707438|gb|EE083837.1|EE083837
EST:     GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG                         TTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
genomic: GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttca ... tactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
EST: gi|110371235|gb|EC935092.1|EC935092
EST:     GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG                         TTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
genomic: GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttca ... tactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagctttgatgattgattgctgaaatcctttttctcgtatgttttactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGCTTGATGCTAAACAAACACAAAGCTTGATCCTCATTTTGTCTAATGTAGT
           gattgat  putative branch site (score: 4)
                                          ttttacttt  putative PPT
                                      tatgtttta  TA-rich tract