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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccatttgatgtttctgttgtttttgtttttgcttttgtgtttttgttgtctgcaagtctgaaaagagttgggggatatcag

Basic information

species Vitis vinifera
transcript Vv01s0010g02460.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406621|gb|CF212248.1|CF212248
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161710455|gb|FC059346.1|FC059346
EST:     CTCTGACAAGAAGATC-AGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: CTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161706852|gb|FC055537.1|FC055537
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|110701389|gb|EE078905.1|EE078905
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161710748|gb|FC060307.1|FC060307
EST:     CTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: CTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|110697161|gb|EE073909.1|EE073909
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161721814|gb|FC070505.1|FC070505
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161716699|gb|FC065571.1|FC065571
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161708621|gb|FC058356.1|FC058356
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCAGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|110687944|gb|EE065928.1|EE065928
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|110373445|gb|EC937683.1|EC937683
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161709828|gb|FC059319.1|FC059319
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161713863|gb|FC062559.1|FC062559
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|110707375|gb|EE083731.1|EE083731
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161708112|gb|FC055727.1|FC055727
EST:     GCTCTGAC-AGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161718038|gb|FC067580.1|FC067580
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161707334|gb|FC055164.1|FC055164
EST:     GCTCTGACAAGAAGATC-AGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|71857565|gb|DT006620.1|DT006620
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161712390|gb|FC061695.1|FC061695
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161715330|gb|FC065818.1|FC065818
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|110688396|gb|EE066900.1|EE066900
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161719339|gb|FC068279.1|FC068279
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161720005|gb|FC067735.1|FC067735
EST:     GCTCTGACAAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
EST: gi|161708879|gb|FC060092.1|FC060092
EST:     AAGAAGATCAAGATTGGAATCAATG                         GGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG
genomic: AAGAAGATCAAGATTGGAATCAATGgtacccattt ... gggatatcagGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCTGACAAGAAGATCAAGATTGGAATCAATGgtacccatttgatgtttctgttgtttttgtttttgcttttgtgtttttgttgtctgcaagtctgaaaagagttgggggatatcag

- - - - AAGAAG
- - - - - - AGATCA