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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTAATGACAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtattgaacttctcttttaagttttatctgtattcagagaaatgaattgaaaattgattgttggtttcctcccttatgatttgtaattcag

Basic information

species Vitis vinifera
transcript Vv01s0010g02460.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os02g38920.1 (Oryza sativa), 5'ss of exon 7
GTTATTAATGACAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtattgaacttctcttttaagttttatctgtattcagagaaatgaattgaa--aattgattg--ttggtttcctcccttatgatttgtaattcag---------
|| || ||||||||||||||||| ||||||||| | ||||||||||| || |||||||||||||| | ||   ||||  |||   | |  ||| || | | ||  ||| |  | | |  |  |   ||   || ||||    |   |||||   | || |          
GTCATCAATGACAGATTTGGCATCGTTGAGGGTTTGATGACCACTGTCCATGCCATCACTGgtag-gcatc--actttgcttaatattaatat-tggactgagtaaaacgtttggtaccatctatctgatctgatttcaattcaagtgattaacatttgaattcctacag

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os04g40950.1 (Oryza sativa), 5'ss of exon 7
GTTATTAATGACAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtattgaacttctcttttaagttttatctgtattcagagaaatgaattgaaaattgattgttggtttcctcccttatgatttgtaattcag
||||| |||||||| ||||| |||||||||||| | ||||||||||| || || ||||||||||   | ||  |  |  || | | ||| | ||  | ||  | |   |   ||   | ||  ||| ||     ||    | | |||  ||   |||
GTTATCAATGACAGGTTTGGTATTGTTGAGGGTTTGATGACCACTGTCCATGCAATCACTGgtatgatctttgaagtacctgtgatgttct-tcattgtt--gtggcgttgcttagcatttctttgatgtaacactgtgctgtaattctta---cag

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os08g03290.3 (Oryza sativa), 5'ss of exon 6
GTTATTAATGACAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtattgaacttctcttttaagttttatctgtattcagagaaatgaattg-aaaattgattgttggtttcctcccttatgatttgtaattcag
|| ||| ||||||  ||||| ||| | |||||||| ||||| |||||||| |||||||||||||     ||   |||  |||||  |       | |   ||   | |||   || || |   |  | || | | ||   ||                
GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt---cttggctttttggcagctaatatgaacatctagatgttctgtaatagctaacgctgatgtacttgttttcag------------

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G071630_T02 (Zea mays), 5'ss of exon 6
GTTATTAATGACAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtat-tgaacttctcttttaagttttatctgtattcagagaaatgaattgaaaattgattgttg---gtttcctcccttatgatttgtaattcag
|| || |||||||  || || |||||||||||||| |||||||||||||| |||||||||||||   | |  ||| ||     || | |   | || | |  ||  |  ||  |   |  || | ||| |    | |    ||||                
GTCATCAATGACAAGTTCGGTATTGTTGAGGGTCTGATGACCACTGTTCATGCCATCACTGgtatgctttgcgaaattgg---ttgaatggaaactttgtctagcaatctgtttgtgatcttcagtgtagtaaatgtggatccttgcag------------

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G046804_T02 (Zea mays), 5'ss of exon 7
GTTATTAATGACAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtattgaacttctcttttaa-gttttatctgtattcagagaaatgaattgaaaattgattgttggtttcctcccttatgatttgtaattcag
|| ||| ||||||  || ||||||||||||||| | ||||| |||||||| ||||||||||||            ||||||||    || ||    | ||||     || | | |   | |||  |||    |  |  | | |||  |||   |||||
GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCATGCCATCACTGgttag---------ttctctttggctgtattcctaggattcttcagaaggtacttgcagttgcctgtaaaatgacagcatgatg-cttgactttcag

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G176307_T01 (Zea mays), 5'ss of exon 7
GTTATTAATGACAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagt-attgaacttctct---tttaagttttatct-gtattcagagaaatgaattgaaaattgattgttggtttcctcccttatgatttgtaattcag
|| || |||||||  || || || ||||||||||| ||||||||||| || |||||||||||||   | |  ||| ||   |   | |||  ||| | | ||| || |     ||  || ||    ||   |  |  ||||  |                  
GTCATCAATGACAAGTTCGGTATCGTTGAGGGTCTGATGACCACTGTCCATGCCATCACTGgtaagcttagcgaaattggttaaatgtaaaatttgtttagtaatctgtttgttgtctttaatgcggagaatgtggatcctttcag----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406621|gb|CF212248.1|CF212248
EST:     TAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|161720959|gb|FC070345.1|FC070345
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|110703819|gb|EE080998.1|EE080998
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|30134772|gb|CB920110.1|CB920110
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|110701389|gb|EE078905.1|EE078905
EST:     CAGATTTGGCATTGTTGAAGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|110384047|gb|EC948461.1|EC948461
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|110697161|gb|EE073909.1|EE073909
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|161721814|gb|FC070505.1|FC070505
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCAT
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCAT
EST: gi|161716699|gb|FC065571.1|FC065571
EST:     TAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|110363529|gb|EC927123.1|EC927123
EST:     TAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|30134770|gb|CB920108.1|CB920108
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|110687944|gb|EE065928.1|EE065928
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|110373445|gb|EC937683.1|EC937683
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|161713863|gb|FC062559.1|FC062559
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|110707375|gb|EE083731.1|EE083731
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGANGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|161718038|gb|FC067580.1|FC067580
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|161712390|gb|FC061695.1|FC061695
EST:     AGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTTCACGCCATCCCTG                         CCACACAGAAGACCGTTGATGG
genomic: AGATTTGGCATTGTTGAGGGTCTTATGACCACTGTT-CACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGG
EST: gi|110707438|gb|EE083837.1|EE083837
EST:     ATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: ATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|71856620|gb|DT005675.1|DT005675
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|161715330|gb|FC065818.1|FC065818
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|110688396|gb|EE066900.1|EE066900
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|110371235|gb|EC935092.1|EC935092
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
EST: gi|161719339|gb|FC068279.1|FC068279
EST:     CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATG
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATG
EST: gi|161720005|gb|FC067735.1|FC067735
EST:     TAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG                         CCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA
genomic: CAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGgtagagtatt ... tgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAA