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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttcagccctcttgattaatcaagctacataaacccgagattatcattcgatacattgatagatttgaggcctctgcagccttagagtagagaggacatgaatcacatttggcattgccctttaattaatccctctaagctttgatgattgattgctgaaatcctttttctcgtatgttttactttgcag

Basic information

species Vitis vinifera
transcript Vv01s0010g02460.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os04g40950.1 (Oryza sativa), 5'ss of exon 11
ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaa--atttcagccctcttgattaatcaagctacataaacccgagattatcattcgatacattgatagatttgaggcctctgcagccttagagtagagagg-acatgaatcacatttggcattgccctttaattaatccctctaagctttgatgattgattgctgaaatcctttttctcgtatgttttactttgcag
 ||||||||||||||||| ||||| || ||||| || |||| ||| ||| | || || || || |||||||||||||||||||| |||||||||  |||||      | | |  || | |  ||| |       || | ||  || | |   || |||      ||||      |||  |  | |||| ||  | |                                                                                            
GTCAAGCATCTTTGATGCAAAGGCCGGTATTGCTCTCAATGACAACTTTGTTAAGCTTGTGTCTTGGTATGACAACGAATGGGGATACAGgtaatcatttctatgtgcattagaaagcta--tacttgttttttagttcatggtt-gtttggttcatatcgcgtaggct-----agctctccattagaaagctatact------------------------------------------------------------------------------------------

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os02g38920.2 (Oryza sativa), 5'ss of exon 10
ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttcagccctcttgattaatcaagctacataaacccgagattatcattcgatacattgatagatttgaggcctctgcagccttagagtagagaggacatgaatcacatttggcattgccctttaattaatccctctaagctttgatgattgattgctgaaatcctttttctcgtatgttttactttgcag
 || ||||||||||||||||||||||| |||||  |||  | ||  ||  |||| || || || ||||| |||||||||||||| ||||||| | | |  ||    ||     || ||  |  |     | |  |    |   ||| |   || |  |         ||  | |  ||  ||                                                                                                       
GTCCAGCATCTTTGATGCCAAGGCTGGCATTGCTTTGAGCGACACGTTCGTGAAGCTTGTGTCCTGGTACGACAACGAATGGGGATACAGgttagtgtgtgctgcatt-----atgaaagtgtaattctctgttacatgctcacgacagtctgcttaaaccacattttcctctga-ttgcag-------------------------------------------------------------------------------------------------------

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G071630_T01 (Zea mays), 5'ss of exon 11
ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttcagccctcttgattaatcaagctacataaacccgagattatcattcgatacattgatagatttgaggcctctgcagccttagagtagagaggacatgaatcacatttggcattgccctttaattaatccctctaagctttgatgattgattgctgaaatcctttttctcgtatgttttactttgcag
 || |||||||||||||| |||||||| |||||| |||| | ||| ||| |||| || || || ||||| |||||||| ||||| ||||||| | |   ||    ||  |   ||||    || |  | |   |  |    | |  | || |     | |   ||  | |    | ||    |  ||                                                                                                  
GTCTAGCATCTTTGATGCGAAGGCTGGCATTGCCTTGAACGGCAACTTTGTGAAGCTTGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagt---agttgcctctacagatcatctgactttgaactagggcttgtgtgcacttcaatttctaaatcctggtttattttccgtttcttttcag--------------------------------------------------------------------------------------------------

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G176307_T01 (Zea mays), 5'ss of exon 11
ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatt--tcagccctcttgattaatcaagctacataaacccgagattatcattcgatacattgatagatttgaggcctctgcagccttagagtagagaggacatgaatcacatttggcattgccctttaattaatccctctaagctttgatgattgattgctgaaatcctttttctcgtatgttttactttgcag
 || |||||||||||||| |||||||| |||||| |||| | ||| ||  |||| ||||| || ||||| |||||||| ||||| ||||||| | ||    ||    ||| |   || |    ||    ||| |         |||    || |   | |||| |   || ||   | ||  ||                                                                                                       
GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggctagttgccttcaccgattatctgactctgaccaggaggagggcttctgcgcacttcaaaatttaatttctatgtctcttttcag-------------------------------------------------------------------------------------------------------

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: PP1S49_34V6.1 (Physcomitrella patens), 5'ss of exon 5
----------ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttcagccctcttgattaatcaagctacataaacccgagattatcattcgatacattgatagatttgaggcctctgcagccttagagtaga----gaggacatgaatcacatttggcattgccctttaattaatccctctaagctttgatgattgattgctgaaatcctttttctcgtatgttttactttgcag
           ||  ||||||| ||||| || |||||  | ||| ||   | ||||||| |||| |||||| |||||||||||||||| ||||| ||||||||   | || | | |      | ||   ||        |  | ||       ||  |  |    ||  |   |  |  ||||   ||  ||   |    || |   |        |||||   ||  ||  |                                                                  
GTGACAGCCGGTCCGGCATCTTCGATGCTAAAGCTGGGTTCGCCATGGCCGACAATTTTGTGAAGCTCGTCGCGTGGTATGACAACGAGTGGGGCTACAGgtatcatccatctcccacctccactcttcctct-----tctaaaatcgcttcgcgccatgtctccagcctcttgaacattgcaatgtttcagctcactctgacgttgtttcctttgtttggatatgtgctgcag-----------------------------------------------------------------

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: PP1S9_47V6.2 (Physcomitrella patens), 5'ss of exon 4
----------ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttcagccctcttgattaatcaagctacataaacccgagattatcattcgatacattgatagatttgaggcctctgcagccttagagtagagaggacatgaatcacatttggcattgccctttaattaatccctctaagctttgatgattgattgctgaaatcctttttctcgtatgttttactttgcag
           || ||||| || ||| |||| || ||| | ||  ||   |  |||||| |||| |||||  ||||||| |||||||| ||||||||||||| |   ||| |  | |  | |||  |  || | |  ||  |||||     ||    | ||| ||   |||| ||  | |||     ||  ||   | | |  |   ||||  |  |  ||  ||  |  ||   |                                                           
GCGATAGCCGGTCCAGCATTTTCGATTCCAAAGCAGGATTCGCTTTGGCCGAAAATTTTGTGAAGCTCGTTGCGTGGTACGACAACGAGTGGGGTTACAGgtga---tca-ctttttccactaa--agtcttcttttacaagagat----gtttagaaaatttat---tttggggattttgcg--tatattgttttgcgcatctttctcaccatgagagttttcccgtggttttgcag---------------------------------------------------------

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: EFJ22884 (Selaginella moellendorffii), 5'ss of exon 10
----------ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttcagccctcttgattaatca-agctacataaacccgagattatcattcgatacattg-atagatttgaggcctctgcagccttagagtagagaggacatgaatcacatttggcattgccctttaattaatccctctaagctttgatgattgattgctgaaatcctttttctcgtatgttttactttgcag
           || |||||||| || ||||  |||||||| ||| |||| | | | ||||| ||  | ||  |||||||||||||||||||||| |||||||           |||    ||  ||  |||| | |      ||  ||  | ||   |   ||    ||                                                                                                                                
GTGACAGCCGGTCGAGCATCTTCGACGCCAGCGCTGGAATCGCCTTGAACGACCACTTTTTAAAGGTGGTTGCGTGGTATGACAACGAATGGGGCTACAGgtgggagaattttctcgcagtttctcggagcttcgtggtattgatcttcactttttttctgttttgcag--------------------------------------------------------------------------------------------------------------------------------

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: EFJ30760 (Selaginella moellendorffii), 5'ss of exon 10
----------ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttcagccctcttgattaatcaagctacataaacccgagattatcattcgatacattgatagatttgaggcctctgcagccttagagtagagaggacatgaatcacatttggcattgccctttaattaatccctctaagctttgatgattgattgctgaaatcctttttctcgtatgttttactttgcag
           || |||||||| || ||||  |||||||| ||| |||| | | | ||| | || || ||  |||||||||||||||||||||| |||||||        |   |  |      |   | |    |    |    || |  ||   | ||                                                                                                                                       
GTGACAGCCGGTCGAGCATCTTCGACGCCAGCGCTGGAATCGCCTTGAACGACCACTTTGTAAAGCTGGTTGCGTGGTATGACAACGAATGGGGCTACAGgtggga---ggattttgtcgcagtttctggtgttgatcttcactttttttcttttttgcag--------------------------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110703819|gb|EE080998.1|EE080998
EST:     GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG                         TTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
genomic: GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttca ... tactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
EST: gi|110384047|gb|EC948461.1|EC948461
EST:     GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG                         TTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
genomic: GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttca ... tactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
EST: gi|30302893|gb|CB979687.1|CB979687
EST:     GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG                         TTCACGGGTAATCGACTTGATCCCCCACATGGCTTCTGTTTAAGCTAAAGC
genomic: GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttca ... tactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
EST: gi|110363529|gb|EC927123.1|EC927123
EST:     GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG                         TTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
genomic: GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttca ... tactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
EST: gi|71886922|gb|DT035977.1|DT035977
EST:     GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG                         TTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
genomic: GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttca ... tactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
EST: gi|110707438|gb|EE083837.1|EE083837
EST:     GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG                         TTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
genomic: GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttca ... tactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
EST: gi|110371235|gb|EC935092.1|EC935092
EST:     GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG                         TTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC
genomic: GCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGgtaaatttca ... tactttgcagTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAAGCTAAAGC