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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaagattgttgatcctctttgttttaacttttaagctgtttctaacaggccatagactttatacatatggcatagctgatggttttgtgtatgcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG

Basic information

species Vitis vinifera
transcript Vv01s0010g02460.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os04g40950.1 (Oryza sativa), 3'ss of exon 10
gtgaaagattgttgatcctctttgttttaacttttaagctgtttctaacaggccatagactttatacatatggcatagctgatggttttgtgtatgcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG
          || ||     | ||||| || |  |    ||| | |       |    |||  |  |   || | |   |    | | ||||||  ||| ||||||||||||||||| ||||| || ||||| || |||| ||| ||| | || || || || |||||||||||||||||||| |||||
----------gtggaga---tctgtttaaattcgtc--ttgtatttggatactcggttactcgaagcccctgacctctttt---gctctgtgta-acagGTCAAGCATCTTTGATGCAAAGGCCGGTATTGCTCTCAATGACAACTTTGTTAAGCTTGTGTCTTGGTATGACAACGAATGGGGATACAG

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os04g40950.3 (Oryza sativa), 3'ss of exon 10
gtgaaagattgttgatcctctttgttttaacttttaagctgtttctaacaggccatagactttatacatatggcatagctgatggttttgtgtatgcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG----------
          || ||     | ||||| || |  |    ||| | |       |    |||  |  |   || | |   |    | | ||||||  ||| ||||||||||||||||| ||||| || ||||| || |||| ||| ||| | || || || || |||||||||||||||||||| |||||          
----------gtggaga---tctgtttaaattcgtc--ttgtatttggatactcggttactcgaagcccctgacctctttt---gctctgtgta-acagGTCAAGCATCTTTGATGCAAAGGCCGGTATTGCTCTCAATGACAACTTTGTTAAGCTTGTGTCTTGGTATGACAACGAATGGGGATACAGGTAATCATTT

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os02g38920.1 (Oryza sativa), 3'ss of exon 10
-----------------------gtgaaagattgttgatcctctttgttttaacttttaagctgtttctaacaggccatagactttatacatatggcatagctgatggttttgtgtat-gcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG
                        || |  ||| | | || | || |||   || | || ||| || ||| | | ||        |||  || |  || |    |||   || |  ||  ||| || ||||||||||||||||||||||| |||||  |||  | ||  ||  |||| || || || ||||| |||||||||||||| |||||
gtaaatttacccattgcagtttcttgtataattatgggtcatattggtt---acctctaggctcttgctatccgacc--------tattaatttaccaaaaa-aatgcacttatccatcacagGTCCAGCATCTTTGATGCCAAGGCTGGCATTGCTTTGAGCGACACGTTCGTGAAGCTTGTGTCCTGGTACGACAACGAATGGGGATACAG

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G071630_T01 (Zea mays), 3'ss of exon 10
------------------------------------------------gtgaaagattgttgatcctctttgtt-ttaacttttaagctgtttctaacag---gccatagactttatacatatggcatagct--------gatggttttgtgta--tgcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG
                                                 |  |    | |  |   ||  |  |  |||  | ||| |  |   ||       |||   ||| | |      || ||  | |        | | || |  |  |    ||| || |||||||||||||| |||||||| |||||| |||| | ||| ||| |||| || || || ||||| |||||||| ||||| |||||
gtgtgtgcttatatatatatatatatatatatatatatatatatatatatatatatatatatacattccctactactaatatctaatcgctcagtagttaatcgccggggacctcaggttactgacaatgtttttttcgtggttgtctctttcaatcacagGTCTAGCATCTTTGATGCGAAGGCTGGCATTGCCTTGAACGGCAACTTTGTGAAGCTTGTGTCCTGGTACGACAACGAGTGGGGATACAG

upper sequence: Vv01s0010g02460.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G176307_T02 (Zea mays), 3'ss of exon 10
----gtgaaagattgttgatcct---ctttgttttaacttttaagctgtttctaacaggccatagact--ttatacatatggcatagctgatggttttgtgta--tgcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG
    |  | | |||    | |     |  | || | |    ||     |  |||   ||||  ||  |  | | || | |    |  ||||| || |     |    ||| || |||||||||||||| |||||||| |||||| |||| | ||| ||  |||| ||||| || ||||| |||||||| ||||| |||||
gtgtgctatacattccctaccactagccattttctgatcagtagttaatcgctag-gggcctcaggttactgacacttttattttttctgattgtctctctcaatcacagGTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110703819|gb|EE080998.1|EE080998
EST:     GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAG                         ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTT
genomic: GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAGgtgaaagatt ... gtgtatgcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTT
EST: gi|110384047|gb|EC948461.1|EC948461
EST:     GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAG                         ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTT
genomic: GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAGgtgaaagatt ... gtgtatgcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTT
EST: gi|30302893|gb|CB979687.1|CB979687
EST:     GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAG                         ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTT
genomic: GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAGgtgaaagatt ... gtgtatgcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTT
EST: gi|110363529|gb|EC927123.1|EC927123
EST:     GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAG                         ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTT
genomic: GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAGgtgaaagatt ... gtgtatgcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTT
EST: gi|71886922|gb|DT035977.1|DT035977
EST:     GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAG                         ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTT
genomic: GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAGgtgaaagatt ... gtgtatgcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTT
EST: gi|30134770|gb|CB920108.1|CB920108
EST:     GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAG                         ATCANGCATCTNTGATGCCAAGGCTGGAATTGCCCTGA
genomic: GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAGgtgaaagatt ... gtgtatgcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGA
EST: gi|110707438|gb|EE083837.1|EE083837
EST:     GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAG                         ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTT
genomic: GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAGgtgaaagatt ... gtgtatgcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTT
EST: gi|110371235|gb|EC935092.1|EC935092
EST:     GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAG                         ATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTT
genomic: GGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAGgtgaaagatt ... gtgtatgcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaacaggccatagactttatacatatggcatagctgatggttttgtgtatgcagATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAG
                tttatacatat  TA-rich tract