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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcagcatctgttgtttgttcgtagagttcttcttgccaatctagagaccctttctttgtgatctgtttcgaaacgtcgttcactgtgaatcacatttttttgtatggagaaatcgatattcagtgcttacatggatgctttctgagcattggtaccacggtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATATAACGTTTCCATCTTCTATACTGCCCCAACTGCAATTCGTTCATTGATGC

Basic information

species Physcomitrella patens
transcript PP1S398_15V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162258983|gb|FC435926.1|FC435926
EST:     GCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG                         GTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
genomic: GCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
EST: gi|162163342|gb|FC339668.1|FC339668
EST:     TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG                         GTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
EST: gi|162197340|gb|FC372302.1|FC372302
EST:     TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG                         GTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
EST: gi|162208860|gb|FC384996.1|FC384996
EST:     TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG                         GTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
EST: gi|162267683|gb|FC443465.1|FC443465
EST:     TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG                         GTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
EST: gi|162255648|gb|FC431646.1|FC431646
EST:     TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG                         GTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
EST: gi|162156881|gb|FC333035.1|FC333035
EST:     TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG                         GTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
EST: gi|162257811|gb|FC434009.1|FC434009
EST:     TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG                         GTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
EST: gi|162178871|gb|FC354803.1|FC354803
EST:     TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG                         GTCCCNCA-CTATCCAGATGCANGTCGCTGCTGGGACATAGTAGACAAATA
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCC-CAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatattcagtgcttacatggatgctttctgagcattggtaccacggtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATATAACGTTTCCATCTTCTATACTGCCCCAACTGCAATTCGTTCATTGATGC
         tgcttac  putative branch site (score: 2)