1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CATTGCATCGACATTTTTCTGGAAGAAGAGATGGCCCGTCAAGGATGGCAAAGTGCATACCGAGAATATTGATGTTCGCAACGGGCGCGTTGCTGTTGAGgtgagtttttgcaattagttcttggggttatcgataatcgattgcaagaatttgattgatcgttggaatgatccgagaggatgattttgatgaatgagtttggtacatgacag
species | Physcomitrella patens |
transcript | PP1S398_15V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGTGCATACCGAGAATATTGATGTTCGCAACGGGCGCGTTGCTGTTGAG TGGTTCAAGGGTGGACAAACCAACATCTGTTACAATGCCATCGACAGGCATEST: gi|18350259|gb|BJ182310.1|BJ182310
genomic: AAGTGCATACCGAGAATATTGATGTTCGCAACGGGCGCGTTGCTGTTGAGgtgagttttt ... tacatgacagTGGTTCAAGGGTGGACAAACCAACATCTGTTACAATGCCATCGACAGGCAT
EST: AAGTGCATACCGAGAATATTGATGTTCGCAACGGGCGCGTTGCTGTTGAG TGGTTCAAGGGTGGACAAACCAACATCTGTTACAATGCCATCGACAGGCATEST: gi|100411817|gb|BY992356.1|BY992356
genomic: AAGTGCATACCGAGAATATTGATGTTCGCAACGGGCGCGTTGCTGTTGAGgtgagttttt ... tacatgacagTGGTTCAAGGGTGGACAAACCAACATCTGTTACAATGCCATCGACAGGCAT
EST: AAGTGCATACCGAGAATATTGATGTTCGCAACGGGCGCGTTGCTGTTGAG TGGTTCAAGGGTGGACAAACCAACATCTGTTACAATGCCATCGACAGGCATEST: gi|162187285|gb|FC363235.1|FC363235
genomic: AAGTGCATACCGAGAATATTGATGTTCGCAACGGGCGCGTTGCTGTTGAGgtgagttttt ... tacatgacagTGGTTCAAGGGTGGACAAACCAACATCTGTTACAATGCCATCGACAGGCAT
EST: AGTGCATACCGAGAATATTGATGTTCGCAACGGGCGCGTTGCTGTTGAG TGGTTCAAGGGTGGACAAACCAACATCTGTTACAATGCCATCGACAGGCATEST: gi|18343859|gb|BJ175897.1|BJ175897
genomic: AGTGCATACCGAGAATATTGATGTTCGCAACGGGCGCGTTGCTGTTGAGgtgagttttt ... tacatgacagTGGTTCAAGGGTGGACAAACCAACATCTGTTACAATGCCATCGACAGGCAT
EST: AAGTGCATACCGAGAATATTGATGTTCGCAACGGGCGCGTTGCTGTTGAG TGGTTCAAGGGTGGACAAACCAACATCTGTTACAATGCCATCGACAGGCATEST: gi|100380343|gb|BY986665.1|BY986665
genomic: AAGTGCATACCGAGAATATTGATGTTCGCAACGGGCGCGTTGCTGTTGAGgtgagttttt ... tacatgacagTGGTTCAAGGGTGGACAAACCAACATCTGTTACAATGCCATCGACAGGCAT
EST: AAGTGCATACCGAGAATATTGATGTTCGCAACGGGCGCGTTGCTGTTGAG TGGTTCAAGGGTGGACAAACCAACATCTGTTACAATGCCATCGACAGGCAT
genomic: AAGTGCATACCGAGAATATTGATGTTCGCAACGGGCGCGTTGCTGTTGAGgtgagttttt ... tacatgacagTGGTTCAAGGGTGGACAAACCAACATCTGTTACAATGCCATCGACAGGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTGCATCGACATTTTTCTGGAAGAAGAGATGGCCCGTCAAGGATGGCAAAGTGCATACCGAGAATATTGATGTTCGCAACGGGCGCGTTGCTGTTGAGgtgagtttttgcaattagttcttggggttatcgataatcgattgcaagaatttgattgatcgttggaatgatccgagaggatgattttgatgaatgagtttggtacatgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT