1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCAGAAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCAAGgtaaagcacttcatatttccagcttttcctcgataaagttttaggcgtagagtggatcccgattcttcaaaaattatgctcagacacggattactgttgaattgctgattcttgtacttaattcgaaattcctgaaaccagtgctttcacattggcag
species | Physcomitrella patens |
transcript | PP1S398_15V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCAAG GGCGTGCTGCATACAACAGGAGGTTACATGGTATATGCGGCTACAACCTTCEST: gi|162197340|gb|FC372302.1|FC372302
genomic: AAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCAAGgtaaagcact ... acattggcagGGCGTGCTGCATACAACAGGAGGTTACATGGTATATGCGGCTACAACCTTC
EST: AAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCAAG GGCGTGCTGCATACAACAGGAGGTTACATGGTATATGCGGCTACAACCTTCEST: gi|162208860|gb|FC384996.1|FC384996
genomic: AAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCAAGgtaaagcact ... acattggcagGGCGTGCTGCATACAACAGGAGGTTACATGGTATATGCGGCTACAACCTTC
EST: AAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCAAG GGCGTGCTGCATACAACAGGAGGTTACATGGTATATGCGGCTACAACCTTCEST: gi|162267683|gb|FC443465.1|FC443465
genomic: AAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCAAGgtaaagcact ... acattggcagGGCGTGCTGCATACAACAGGAGGTTACATGGTATATGCGGCTACAACCTTC
EST: CACTGGGAAGCCCAAG GGCGTGCTGCATACAACAGAGAGAGTTACATGAGTATATGCGAGCTACAACEST: gi|162255648|gb|FC431646.1|FC431646
genomic: CACTGGGAAGCCCAAGgtaaagcact ... acattggcagGGCGTGCTGCATACAACAG-GAG-GTTACATG-GTATATGCG-GCTACAAC
EST: AAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCAAG GGCGTGCTGCATACAACAGGAGGTTACATGGTATATGCGGCTACAACCTTCEST: gi|162257811|gb|FC434009.1|FC434009
genomic: AAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCAAGgtaaagcact ... acattggcagGGCGTGCTGCATACAACAGGAGGTTACATGGTATATGCGGCTACAACCTTC
EST: AAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCAAG GGCGTGCTGCATACAACAGGAGGTTACATGGTATATGCGGCTACAACCTTCEST: gi|162178871|gb|FC354803.1|FC354803
genomic: AAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCAAGgtaaagcact ... acattggcagGGCGTGCTGCATACAACAGGAGGTTACATGGTATATGCGGCTACAACCTTC
EST: AAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCAAG GGCGTGCTGCATACAACAGGAGGTTACATGGTATATGCGGCTACAACCTTC
genomic: AAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCAAGgtaaagcact ... acattggcagGGCGTGCTGCATACAACAGGAGGTTACATGGTATATGCGGCTACAACCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCAGAAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCAAGgtaaagcacttcatatttccagcttttcctcgataaagttttaggcgtagagtggatcccgattcttcaaaaattatgctcagacacggattactgttgaattgctgattcttgtacttaattcgaaattcctgaaaccagtgctttcacattggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG