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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATAAAGATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacgctttacccgcgttcattagagctcatttttttcttttgtgcaagtttgcattggatctctcatctttgttggagttcggaagagtcatattgaacacatcatggtgaattttgaccgatcaatttcgcttttatgccttgatattattctggacgtctcaaaatttgtgaatgcaattgtacag

Basic information

species Physcomitrella patens
transcript PP1S398_15V6.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S398_15V6.1 (Physcomitrella patens), 5'ss of exon 14
lower sequence: GLYMA19G28300.1 (Glycine max), 5'ss of exon 14
AGATAAAGATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacgctttacccgcgttcattagagctcatttttttcttttgtgcaagtttgcattggatctctcatctttgttggagttcggaagagtcatattgaacac-atcatggtgaattttgaccgatcaatttcgcttttatgccttgatattattctggacgtctcaaaatttgtgaatgcaattgtacag
 ||||||||||| ||| ||||| | |  ||| |||| ||||||||||||||||||||||     |  |||||       |   || ||||  || |  |  ||  | |||  ||  |   | |||  | |  || ||    |  | |||  |    || ||||  |  ||  |  ||   |  | ||    || | | || |    |||| |  ||     | | |  |                       
GGATAAAGATGGATACCATTGGCTCATTGGAAGAGTTGACGATGTCATCAATGTTAGgt-----attcttta-----aatttctaaagctttttctgataattcct-caatcttata--agttcttgctttattctttatatatgtaagcat----ttaaacatgaatatcttccatgcagttctattctatttgatgttctagtctgatgtagttgctatcatatgcag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162163341|gb|FC339667.1|FC339667
EST:     GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|162208859|gb|FC384995.1|FC384995
EST:     GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|162258983|gb|FC435926.1|FC435926
EST:     GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|162178870|gb|FC354802.1|FC354802
EST:     GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|162187284|gb|FC363234.1|FC363234
EST:     GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCTGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|162156880|gb|FC333034.1|FC333034
EST:     GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|162257810|gb|FC434008.1|FC434008
EST:     GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|162258982|gb|FC435925.1|FC435925
EST:     GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|67723995|gb|BJ974254.1|BJ974254
EST:     GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|37829232|gb|BJ587244.1|BJ587244
EST:     TGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: TGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|162267683|gb|FC443465.1|FC443465
EST:     GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|162255647|gb|FC431645.1|FC431645
EST:     GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|162171541|gb|FC347843.1|FC347843
EST:     GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|162156881|gb|FC333035.1|FC333035
EST:     GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|162197339|gb|FC372301.1|FC372301
EST:     CAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: CAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|162267682|gb|FC443464.1|FC443464
EST:     GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: GATGGTTACTATTGGTTGACAGGACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
EST: gi|67695932|gb|BJ956165.1|BJ956165
EST:     ATNGTTNCTATTGGTTGACAGGNACGAGTNGNCGATGTCATCAATGTTAG                         TGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC
genomic: ATGGTTACTATTGGTTGACAGG-ACGAGTCGACGATGTCATCAATGTTAGgtcagtgacg ... aattgtacagTGGGCACCGCATTGGTACAGCCGAGGTAGAGTCTGCTCTTGTTTCGCATCC