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gttgagtttgtctgtttccctcttgttctctgtgtttttgatgatcctttgttagagaggcgagtgttgctaacattttgaaattttcgacgttgtttgaattggataagactgacacctctccaatgttcctatcagGATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCAGAAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCA
species | Physcomitrella patens |
transcript | PP1S398_15V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAG GATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCAEST: gi|162197340|gb|FC372302.1|FC372302
genomic: TGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAGgttgagtttg ... ttcctatcagGATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCA
EST: TGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAG GATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCAEST: gi|162187285|gb|FC363235.1|FC363235
genomic: TGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAGgttgagtttg ... ttcctatcagGATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCA
EST: TGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAG GATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGEST: gi|162208860|gb|FC384996.1|FC384996
genomic: TGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAGgttgagtttg ... ttcctatcagGATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACG
EST: TGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAG GATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCAEST: gi|162255648|gb|FC431646.1|FC431646
genomic: TGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAGgttgagtttg ... ttcctatcagGATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCA
EST: CGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAG GATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCAEST: gi|162257811|gb|FC434009.1|FC434009
genomic: CGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAGgttgagtttg ... ttcctatcagGATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCA
EST: TGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAG GATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCAEST: gi|162178871|gb|FC354803.1|FC354803
genomic: TGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAGgttgagtttg ... ttcctatcagGATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCA
EST: TGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAG GATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCA
genomic: TGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAGgttgagtttg ... ttcctatcagGATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCA
ttttcgacgttgtttgaattggataagactgacacctctccaatgttcctatcagGATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCAGAAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCA
gactgac putative branch site (score: 2)
ttcctatc putative PPT
tttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgagtttgtctgtttccctcttgttctctgtgtttttgatgatcctttgttagagaggcgagtgttgctaacattttgaaattttcgacgttgtttgaattggataagactgacacctctccaatgttcctatcagGATATCGTGCCATCATATGCAAAAGAATGTGATGTGGAGTGGGTTGACGCAGAAGATACGCTGTTTTTGTTATACACCAGTGGAAGCACTGGGAAGCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG