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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaggctctcttcattgtcaagccctctgtttattggtttcatttactaactgtctgcgaggagttgttacccaaagaatttcttacttaattccacgttgattgataatatgccaaaggacttccctcttggtctacgttgtcaaaagtctacatgctgatgttgtggaattttgtcgtttccagATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACCTTACCCTTCTTTGGTGTCCAG

Basic information

species Physcomitrella patens
transcript PP1S398_15V6.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162258983|gb|FC435926.1|FC435926
EST:     TCTGCCCTATAGTTGATACATGGTGGCAAACAGAGACGGGGGGTTTCATG                         ATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACCTTA
genomic: TCTGCCCTATAGTTGATACATGGTGGCAAACAGAGACGGGGGGTTTCATGgtaaaggctc ... tcgtttccagATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACCTTA
EST: gi|162163342|gb|FC339668.1|FC339668
EST:     TCTGCCCTATAGTTGATACATGGTGGCAAACAGAGACGGGGGGTTTCATG                         ATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACCTTA
genomic: TCTGCCCTATAGTTGATACATGGTGGCAAACAGAGACGGGGGGTTTCATGgtaaaggctc ... tcgtttccagATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACCTTA
EST: gi|162208860|gb|FC384996.1|FC384996
EST:     TCTGCCCTATAGTTGATACATGGTGGCAAACAGAGACGGGGGGTTTCATG                         ATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACC
genomic: TCTGCCCTATAGTTGATACATGGTGGCAAACAGAGACGGGGGGTTTCATGgtaaaggctc ... tcgtttccagATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACC
EST: gi|162267683|gb|FC443465.1|FC443465
EST:     TCTGCCCTATAGTTGATACATGGTGGCAAACAGAGACGGGGGGTTTCATG                         ATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACCTTA
genomic: TCTGCCCTATAGTTGATACATGGTGGCAAACAGAGACGGGGGGTTTCATGgtaaaggctc ... tcgtttccagATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACCTTA
EST: gi|162255648|gb|FC431646.1|FC431646
EST:     TCTGCCCTATAGTTGATACATGGTGGCAAACAGAGACGGGGGGTTTCATG                         ATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACCTTA
genomic: TCTGCCCTATAGTTGATACATGGTGGCAAACAGAGACGGGGGGTTTCATGgtaaaggctc ... tcgtttccagATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACCTTA
EST: gi|162156881|gb|FC333035.1|FC333035
EST:     TCTGCCCTATAGTTGATACATGGTGGCAAACAGAGACGGGGGGTTTCATG                         ATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACCTTA
genomic: TCTGCCCTATAGTTGATACATGGTGGCAAACAGAGACGGGGGGTTTCATGgtaaaggctc ... tcgtttccagATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACCTTA
EST: gi|162257811|gb|FC434009.1|FC434009
EST:     TCTGCCCTATAGTTGATACATGGTGGCAAACAGAGACGGGGGGTTTCATG                         ATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACCTTA
genomic: TCTGCCCTATAGTTGATACATGGTGGCAAACAGAGACGGGGGGTTTCATGgtaaaggctc ... tcgtttccagATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtctacgttgtcaaaagtctacatgctgatgttgtggaattttgtcgtttccagATTACCCCGCAACCAGGCGCTTGGGCTCTTAAACCTGGATCTGCTACCTTACCCTTCTTTGGTGTCCAG
                        tgctgat  putative branch site (score: 3)
                                             tcgtttcc  putative PPT
                                      aattttgt  TA-rich tract