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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGACGAGCAGTGCGGTGAAACGTGGCGCCAAGATTATCAAACTCAAGGATATTGTTGATGATGCATTATCACGTGCATCAGCGGATGGTCACACTGTAGgtgggcaccttcaaggaatagcccgagtttatttgatcagaaattgaagaatttcgttcaatattaaccaactactggaagactggtctatttctaaacgtattgcaattttcttgattatttgcgtgcag

Basic information

species Physcomitrella patens
transcript PP1S398_15V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162163342|gb|FC339668.1|FC339668
EST:     GCGGATGGTCACACTGTAG                         GTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
genomic: GCGGATGGTCACACTGTAGgtgggcacct ... ttgcgtgcagGTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
EST: gi|162187285|gb|FC363235.1|FC363235
EST:     TATTGTTGATGATGCATTATCACGTGCATCAGCGGATGGTCACACTGTAG                         GTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
genomic: TATTGTTGATGATGCATTATCACGTGCATCAGCGGATGGTCACACTGTAGgtgggcacct ... ttgcgtgcagGTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
EST: gi|162208860|gb|FC384996.1|FC384996
EST:     CATTATCACGTGCATCAGCGGATGGTCACACTGTAG                         GTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
genomic: CATTATCACGTGCATCAGCGGATGGTCACACTGTAGgtgggcacct ... ttgcgtgcagGTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
EST: gi|162257811|gb|FC434009.1|FC434009
EST:     ATGCATTATCACGTGCATCAGCGGATGGTCACACTGTAG                         GTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
genomic: ATGCATTATCACGTGCATCAGCGGATGGTCACACTGTAGgtgggcacct ... ttgcgtgcagGTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
EST: gi|162178871|gb|FC354803.1|FC354803
EST:     TATTGTTGATGATGCATTATCACGTGCATCAGCGGATGGTCACACTGTAG                         GTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
genomic: TATTGTTGATGATGCATTATCACGTGCATCAGCGGATGGTCACACTGTAGgtgggcacct ... ttgcgtgcagGTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG