Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGACAAATACGGAACGAAAAATATGTCTTGGAAAAGCGCATTGCATATATGCGTCTGgtatgcatgaaattttgttgaaatctttgtgaaattccttaagcatcttttgtgttttgcatttttccttatatttggttgagcttctgctcaaataaataatttgtaatattgctgctag

Basic information

species Glycine max
transcript GLYMA20G35770.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35770.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G08440.2 (Arabidopsis thaliana), 5'ss of exon 6
GAAGGACAAATACGGAACGAAAAATATGTCTTGGAAAAGCGCATTGCATATATGCGTCTGgtatgcatgaaattttgttgaaatctttgtgaaattccttaagcatcttttgtgttttgcatttttcct-tatatttggttgagcttctgctcaaataaataatttgtaatattgctgctag
||||  |||||||| || ||||||||||| ||||||||||| |||||  | ||||||  |||  || |    |||| |  |     ||   ||||   |  | | | | |  |||   | ||| |   |   ||||  ||| | |  ||       ||| | || | |  | ||| ||  ||
GAAGTCCAAATACGCAATGAAAAATATGTTTTGGAAAAGCGTATTGCGCACATGCGTTCGgttagcttttctttttatcta-----ttacaaaatatgtgtaac-tttatcttgtgacgaattatagttacttattctgtt-aaccacttagggggtaatttatctttcttgttg-tgacag