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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgttatacttctgcgtaagattatgttctccctttcttctggtattgtgatgaactcagtcatgatttgtccaaaatacagGGGCAAAGCAACCAACCTACCTTGTCAACGCCGATGATGTTGGTACATTACTTGCCATTGAAGTCCAACCTCTGGATAACAGGAAGCGCAAG

Basic information

species Glycine max
transcript GLYMA20G35770.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335985|gb|CO979851.1|CO979851
EST:     GAGTGGATTCGACATTTGGAAGATGGTTCCTTTAATTATATTGATG                         GGGCAAAGCAACCAACCTACCTTGTCAACGCCGATGATGTTGGTACATTAC
genomic: GAGTGGATTCGACATTTGGAAGATGGTTCCTTTAATTATATTGATGgtattgttat ... caaaatacagGGGCAAAGCAACCAACCTACCTTGTCAACGCCGATGATGTTGGTACATTAC
EST: gi|17963067|gb|BM269820.1|BM269820
EST:     TGGATTCGACATTTGGAAGATGGTTCCTTTAATTATATTGATG                         GGGCAAAGCAACCAACCTACCTTGTCAACGCCGATGATGTTGGTACATTAC
genomic: TGGATTCGACATTTGGAAGATGGTTCCTTTAATTATATTGATGgtattgttat ... caaaatacagGGGCAAAGCAACCAACCTACCTTGTCAACGCCGATGATGTTGGTACATTAC
EST: gi|21888872|gb|BQ742085.1|BQ742085
EST:     TGGATTCGACATTTGGAAGATGGTTCCTTTAATTATATTGATG                         GGGCAAAGCAACCAACCTACCTTGTCAACGCCGATGATGTTGGTACATTAC
genomic: TGGATTCGACATTTGGAAGATGGTTCCTTTAATTATATTGATGgtattgttat ... caaaatacagGGGCAAAGCAACCAACCTACCTTGTCAACGCCGATGATGTTGGTACATTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctccctttcttctggtattgtgatgaactcagtcatgatttgtccaaaatacagGGGCAAAGCAACCAACCTACCTTGTCAACGCCGATGATGTTGGTACATTACTTGCCATTGAAGTCCAACCTCTGGATAACAGGAAGCGCAAG
                                       tttgtcc  CT-rich tract
                                              aaaataca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattgttatacttctgcgtaagattatgttctccctttcttctggtattgtgatgaactcagtcatgatttgtccaaaatacagGGGCAAAGCAACCAACCTACCTTGTCAACGCCGATGATGTTGGTACATTACTTGCCATTGAAGTCCAACCTCTGGATAACAGGAAGCGCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG