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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaggtgtaaaatagttttaagctgtttagagtatattttgtctcaatgtccattttggtgactgatcatttttccataccagGAAGGACAAATACGGAACGAAAAATATGTCTTGGAAAAGCGCATTGCATATATGCGTCTG

Basic information

species Glycine max
transcript GLYMA20G35770.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35770.3 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os05g01060.2 (Oryza sativa), 3'ss of exon 5
gtaaaaggtgtaaaatagttttaagctgtttagagtatattttgt-ctcaatgtccattttggtgactgatcatttttccataccagGAAGGACAAATACGGAACGAAAAATATGTCTTGGAAAAGCGCATTGCATATATGCGTCTG
      |  |  |   |   | |  ||   || | | | |||| | |||  |  |||  |   |||| | | || ||||  |   |||||| ||||||||  ||||| ||| |||| |||||||| ||||||||||| |||||  ||
------gtggctatgcacaataagactcactacattcttttttctactcctttcccaggtatttgacagcttatgtttct-tggtagGAAGCACAAATACTCAACGAGAAACATGTTTTGGAAAAACGCATTGCATACATGCGAATG

upper sequence: GLYMA20G35770.3 (Glycine max), 3'ss of exon 7
lower sequence: AT5G08440.2 (Arabidopsis thaliana), 3'ss of exon 5
gtaaaaggtgtaaaatagttttaagctgtttagagtatattttgtctcaatgtccattttggtgactgatcatttttcca--------taccagGAAGGACAAATACGGAACGAAAAATATGTCTTGGAAAAGCGCATTGCATATATGCGTCTG
|||||  |       || | |  || |||||   | ||| || ||    || | || |    || ||||  |   ||           |   ||||||  |||||||| || ||||||||||| ||||||||||| |||||  | ||||||  |
gtaaatcgctagttttaatctctag-tgttttatgcatacttggt--tgatttacactacattgtctgaataaccttttggcctgtttttttagGAAGTCCAAATACGCAATGAAAAATATGTTTTGGAAAAGCGTATTGCGCACATGCGTTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagtatattttgtctcaatgtccattttggtgactgatcatttttccataccagGAAGGACAAATACGGAACGAAAAATATGTCTTGGAAAAGCGCATTGCATATATGCGTCTG
                                gactgat  putative branch site (score: 3)
                                      tcatttttcc  CT-rich tract
     atattttgt  TA-rich tract