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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaatgtgtattttgtaaactgagttagacagcgtttgattttctgctattggatatctagtctttttttatactatatctcatgcattctgtggttatagGGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTG

Basic information

species Glycine max
transcript GLYMA20G35770.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35770.4 (Glycine max), 3'ss of exon 16
lower sequence: AT5G23510.1 (Arabidopsis thaliana), 3'ss of exon 4
---------------------------------------------------------------------------------------gaatgtgtattttgtaaactgagttagacagcgtttgatttt-ctgctattggatatctagtctttttttatactatatctcatgcattctgtggttatagGGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTG
                                                                                       |||| |  || | | ||    ||||        | || ||   | | | ||   || | | | |||||   |  | |         | | | || ||  ||||||| | |||||||||||||||||||||||||   ||||| |||||  
gtttaatatctttttatatgaatgagatcatatgttagagttgttcttctctgtggaaagctaggattatgattttgtggtatactggaatcttgatatggaaagtacagttgtgttagatgtgcttacacagttgttttctaccgattgtttttcagttttttcatgttgctactttctgatttcagGGAGAGCTTGTGAAGGTTTTTGCCAATGATAATCGCAAGATCGCTTGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335985|gb|CO979851.1|CO979851
EST:     GTACATTACTTGCCATTGAAGTCCAACCTCTGGATAACAGGAAGCGCAAG                         GGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTG
genomic: GTACATTACTTGCCATTGAAGTCCAACCTCTGGATAACAGGAAGCGCAAGgtactttttc ... gtggttatagGGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTG
EST: gi|51336632|gb|CO980498.1|CO980498
EST:     GAAGTCCAACCTCTGGATAACAGGAAGCGCAAG                         GGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTG
genomic: GAAGTCCAACCTCTGGATAACAGGAAGCGCAAGgtactttttc ... gtggttatagGGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTG
EST: gi|21888872|gb|BQ742085.1|BQ742085
EST:     GTACATTACTTGCCATTGAAGTCCAACCTCTGGATAACAGGAAGCGCAAG                         GGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTGA
genomic: GTACATTACTTGCCATTGAAGTCCAACCTCTGGATAACAGGAAGCGCAAGgtactttttc ... gtggttatagGGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattggatatctagtctttttttatactatatctcatgcattctgtggttatagGGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTG
            tagtctttttttatac  TA-rich tract