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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGTTTAAACATTTACAGGAAAAACTTCTTCTCACTGAGgtatgttgggcatatatttgagtgctttgtattcctgtatgccctgttatggtttggtttgtagataattcaatcgaattagttcttaagtttagttggatgagatagtagatattgttgaaagtttgcaatgtttacttttcgtttttgctataggaattgatctattggtttgtatttgttctttgttacag

Basic information

species Glycine max
transcript GLYMA20G35770.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35770.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G23490.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTTTGTTTAAACATTTACAGGAAAAACTTCTTCTCACTGAGgtatgttgggcatatatttgagtgctttgtatt---cctgtatgccctgttatggtttggtttgtagataattcaatcgaattagttcttaagtttagttggatgagatagtagatattgttgaaagtttgcaatgtttacttttcgtttttgctataggaattgatctattggtttgtatttgttctttgttacag
||||||||||| ||| |||| ||||| || ||||| |||||||||||||   |   |||  |  |   | || ||    ||   || | || |    ||| |  |   | |  ||   | |  ||   |  |   |||| ||     ||| |   ||||  | |||  ||||   || |||  || | ||  | |                                            
GTTTTGTTTAAGCATCTACAAGAAAAGCTCCTTCTTACTGAGgtatgttatccgggtatgggcttatctggtgttaaatctcagtgtc-tgcttcatttttgacttctgtttttttcttagcgttgaat--tggctttatttcttacagacatatgata--gatgattgtttctgatcttt--ttcttgtactag--------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8670390|gb|BE191497.1|BE191497
EST:     GTTTTGTTTAAACATTTACAGGAAAAACTTCTTCTCACTGAG                         TCAAAGCTAAAGGAGTCACAATATCAATTGACACCTTGGCGTTCAGATATG
genomic: GTTTTGTTTAAACATTTACAGGAAAAACTTCTTCTCACTGAGgtatgttggg ... tttgttacagTCAAAGCTAAAGGAGTCACAATATCAATTGACACCTTGGCGTTCAGATATG