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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTGgtgagtatctatatcttaatatttctgaagtttatttgtttcttccttctgtgtaacttgaatgatttacagtaaataattgcaagtctgtggtgagttt...

Basic information

species Glycine max
transcript GLYMA20G35770.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35770.4 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os05g01060.1 (Oryza sativa), 5'ss of exon 16
GGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTGgtgagtatctatatcttaatatttctgaagtttatttgtttcttccttctgtgtaacttgaatgatttacagtaaataattgcaagtctgtggtgagttt------
|| ||    |||||||||| |||||||||  | ||||||||| |||||||||||| |   |  | | |||||| |    ||| |||   |   |    |   |   ||| || |  |||| |   |   | |||     || ||| ||       
GGGGAGATCGTGAAGGTTTATGCCAATGAACAAAAAAAGATTACTTGTGgtgagtttgc-tgacatgatatttgt----tttcttttagtgggcagcttaaatggtttgtatcagatacattttttttgttcaaaag-atgatgaattactttat

upper sequence: GLYMA20G35770.4 (Glycine max), 5'ss of exon 17
lower sequence: AT5G23510.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTGgtgagtatctatatcttaatatttctgaagtttatttgtttcttccttctgtgtaacttgaatgatttacagtaaata-----attgcaagtctgtggtgagttt
||||| | |||||||||||||||||||||||||   ||||| |||||  || |||    || | || |  |  ||  ||  | |   | |     | || |  | || ||    ||  ||||  |       ||   |||||| | |||     
GGAGAGCTTGTGAAGGTTTTTGCCAATGATAATCGCAAGATCGCTTGCCgtaagt--taatctatttacttagctagagaatctccctcttgagttcctataaagctagaccacttgtcagtttacgtctcgatgttaagtcttttgtgct---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335985|gb|CO979851.1|CO979851
EST:     GGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTG                         ATCCTGAAATGCAGAACCACATAGAGAAGGCTTTTTACAGTGGACATGCTT
genomic: GGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTGgtgagtatct ... ttgttctcagATCCTGAAATGCAGAACCACATAGAGAAGGCTTTTTACAGTGGACATGCTT
EST: gi|51336632|gb|CO980498.1|CO980498
EST:     GGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTG                         ATCCTGAAATGCAGAACCACATAGAGAAGGCTTTTTACAGTGGACATGCTT
genomic: GGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTGgtgagtatct ... ttgttctcagATCCTGAAATGCAGAACCACATAGAGAAGGCTTTTTACAGTGGACATGCTT