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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAGgtcagcatttacttcaagacagaaaaatccaatgttatatatgagatatttccattttgtttagttgtattcttcagcatgaagaaaaattgtgtcaacttgtgacttttacagtattccttactctctccagtataaaactttactacaatcttcctaatatatttatggatttgacag

Basic information

species Glycine max
transcript GLYMA20G33060.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24136349|gb|BU926859.1|BU926859
EST:     GTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAG                         GTTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAG
genomic: GTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAGgtcagcattt ... gatttgacagGTTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAG
EST: gi|15813546|gb|BI785821.1|BI785821
EST:     GTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAG                         GTTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAG
genomic: GTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAGgtcagcattt ... gatttgacagGTTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAG
EST: gi|7924149|gb|AW830175.1|AW830175
EST:     GTATCATCCTCNCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAG                         GTTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAG
genomic: GTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAGgtcagcattt ... gatttgacagGTTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAG
EST: gi|7284548|gb|AW597136.1|AW597136
EST:     CCCACCTGATAAG                         GTTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAG
genomic: CCCACCTGAGAAGgtcagcattt ... gatttgacagGTTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAG
EST: gi|22523872|gb|BU082683.1|BU082683
EST:     GTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAG                         GTTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAG
genomic: GTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAGgtcagcattt ... gatttgacagGTTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAG
EST: gi|192318791|gb|FK008003.1|FK008003
EST:     GTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGA-G                         -TTTTCTTAT-CCAAAAG-CTGCTATTT
genomic: GTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAGgtcagcattt ... gatttgacagGTTTTCTTATTCCAAAAGGCTGCTATTT
EST: gi|23064484|gb|BU579257.1|BU579257
EST:     GTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAG                         GTTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAG
genomic: GTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAGgtcagcattt ... gatttgacagGTTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAG
EST: gi|15663580|gb|BI700951.1|BI700951
EST:     GTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAG                         GTTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAG
genomic: GTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAGgtcagcattt ... gatttgacagGTTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAG