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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatcaatattcctttagttcattgcgttcatcacattatgcataagtatgccttgcacctttcgtgtctaattttgttttcctctttctttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG

Basic information

species Glycine max
transcript GLYMA20G33060.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24136349|gb|BU926859.1|BU926859
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGAACCTGCGGGGACCATACCCT
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCT
EST: gi|15813546|gb|BI785821.1|BI785821
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|7284548|gb|AW597136.1|AW597136
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTTGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAAACCCTGCGGGGACAATACCCTG
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|22523872|gb|BU082683.1|BU082683
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtatgccttgcacctttcgtgtctaattttgttttcctctttctttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG
                     gtctaat  putative branch site (score: 3)
             cctttcgtgtctaatt  CT-rich tract
                      tctaattttgtttt  TA-rich tract