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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGTGAATTTCTCTCTAAATTGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaagaaacttcaaggtcttttgaagaatgaactctccacacctatgacagaaagatgctaagctgtagtgtgcttaatcgtgattctaaaacatgtctttcttctgtaaaattattgtag

Basic information

species Glycine max
transcript GLYMA20G33060.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318792|gb|FK008004.1|FK008004
EST:     TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAG                         GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
genomic: TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaaga ... attattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
EST: gi|15813546|gb|BI785821.1|BI785821
EST:     TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAG                         GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
genomic: TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaaga ... attattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
EST: gi|7924149|gb|AW830175.1|AW830175
EST:     TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAG                         GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
genomic: TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaaga ... attattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
EST: gi|22523872|gb|BU082683.1|BU082683
EST:     TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAG                         GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
genomic: TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaaga ... attattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
EST: gi|192318791|gb|FK008003.1|FK008003
EST:     TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAG                         GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
genomic: TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaaga ... attattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
EST: gi|23064484|gb|BU579257.1|BU579257
EST:     TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAG                         GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
genomic: TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaaga ... attattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
EST: gi|15663580|gb|BI700951.1|BI700951
EST:     TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAG                         GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
genomic: TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaaga ... attattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACGTGAATTTCTCTCTAAATTGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaagaaacttcaaggtcttttgaagaatgaactctccacacctatgacagaaagatgctaagctgtagtgtgcttaatcgtgattctaaaacatgtctttcttctgtaaaattattgtag

- - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG