Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaagaaacttcaaggtcttttgaagaatgaactctccacacctatgacagaaagatgctaagctgtagtgtgcttaatcgtgattctaaaacatgtctttcttctgtaaaattattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAG

Basic information

species Glycine max
transcript GLYMA20G33060.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318792|gb|FK008004.1|FK008004
EST:     TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAG                         GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
genomic: TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaaga ... attattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
EST: gi|15813546|gb|BI785821.1|BI785821
EST:     TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAG                         GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
genomic: TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaaga ... attattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
EST: gi|7924149|gb|AW830175.1|AW830175
EST:     TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAG                         GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
genomic: TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaaga ... attattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
EST: gi|22523872|gb|BU082683.1|BU082683
EST:     TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAG                         GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
genomic: TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaaga ... attattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
EST: gi|192318791|gb|FK008003.1|FK008003
EST:     TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAG                         GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
genomic: TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaaga ... attattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
EST: gi|23064484|gb|BU579257.1|BU579257
EST:     TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAG                         GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
genomic: TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaaga ... attattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
EST: gi|15663580|gb|BI700951.1|BI700951
EST:     TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAG                         GGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC
genomic: TGGGTGACCTGAAGCAGACACATATTTATGCAAAGATTGAAAATATAGAGgtaattaaga ... attattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtgtgcttaatcgtgattctaaaacatgtctttcttctgtaaaattattgtagGGAATGAAACATTTTGATGAAATATTGAGAGAAGCAGATGGTATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCACCTGAGAAG
                  ttctaaa  putative branch site (score: 2)
                                    ttctgtaaaattatt  TA-rich tract