1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGAAAGCCAGTTGTTGTTACACGTGTTGTGGACTCTATGACTGATAATCTAAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattactttttttgttatatttggtgaatccagtttgatttattttgataatgattgcaatacagaattttataaactctagcatttaatacatgtg...
species | Glycine max |
transcript | GLYMA20G33060.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG GAAGTGACGCAATTCTCCTTGGAGCAGAGAACCTGCGGGGACCATACCCTEST: gi|15813546|gb|BI785821.1|BI785821
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCT
EST: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTGEST: gi|7284548|gb|AW597136.1|AW597136
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTTGATG GAAGTGACGCAATTCTCCTTGGAGCAGAAACCCTGCGGGGACAATACCCTGEST: gi|22523872|gb|BU082683.1|BU082683
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAGCCAGTTGTTGTTACACGTGTTGTGGACTCTATGACTGATAATCTAAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattactttttttgttatatttggtgaatccagtttgatttattttgataatgattgcaatacagaattttataaactctagcatttaatacatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG