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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGGTAAAAAACACTGCCACACTCTCTGGATCATTGTTTACTGTACATGTCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaacaagaaacttgagcaaaagtagtgagaatgacataatgtgatcaagttgccaatatactttgtgtttgagaatggatgcttcaatttttatc...

Basic information

species Glycine max
transcript GLYMA20G33060.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318792|gb|FK008004.1|FK008004
EST:     TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG                         GTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTCCATTATAT
genomic: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
EST: gi|6070532|gb|AW099919.1|AW099919
EST:     TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG                         GTAATAAGCACATGGGGTGTTCATCACAATATTGACTTTCTTGCATTATAT
genomic: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
EST: gi|7924149|gb|AW830175.1|AW830175
EST:     CATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG                         GTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
genomic: CATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
EST: gi|22523872|gb|BU082683.1|BU082683
EST:     CAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG                         GTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
genomic: CAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
EST: gi|192318791|gb|FK008003.1|FK008003
EST:     TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG                         GTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTCCATTATAT
genomic: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
EST: gi|23064484|gb|BU579257.1|BU579257
EST:     TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG                         GTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
genomic: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
EST: gi|15663580|gb|BI700951.1|BI700951
EST:     TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG                         GTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
genomic: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
EST: gi|5820250|gb|AI988456.1|AI988456
EST:     TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG                         GTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
genomic: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTGGTAAAAAACACTGCCACACTCTCTGGATCATTGTTTACTGTACATGTCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaacaagaaacttgagcaaaagtagtgagaatgacataatgtgatcaagttgccaatatactttgtgtttgagaatggatgcttcaatttttatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG