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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatttaagcctttgaacaattgtgttttgctcatgtctataatatgtttctgagttatctgttttgtcatctcattcttcttttcttcccatgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG

Basic information

species Glycine max
transcript GLYMA20G33060.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318792|gb|FK008004.1|FK008004
EST:     GATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|6070532|gb|AW099919.1|AW099919
EST:     CAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: CAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|209703125|gb|BW673297.1|BW673297
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|13251787|gb|BG362690.1|BG362690
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|15815853|gb|BI788128.1|BI788128
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|37996783|gb|CF808372.1|CF808372
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|8282879|gb|BE020440.1|BE020440
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|13311729|gb|BG405380.1|BG405380
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|193364639|gb|FK330096.1|FK330096
EST:     GTCACGATCAGTTGCTATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGGTGATCCAGAATACCATCAAGAGACA
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCAT-GGGGTGATCCAGAATACCATCAAGAGACA
EST: gi|213590485|gb|DB968077.1|DB968077
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|193355763|gb|FK319536.1|FK319536
EST:     GTCACGATCAGTTGCTATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|213592816|gb|DB957846.1|DB957846
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|213620116|gb|DB965408.1|DB965408
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|213601205|gb|DB964684.1|DB964684
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|192318791|gb|FK008003.1|FK008003
EST:     GATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|15663975|gb|BI701346.1|BI701346
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|209724487|gb|BW658204.1|BW658204
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|193409611|gb|FK371221.1|FK371221
EST:     GTCACGATCAGTTGCTATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|209729393|gb|BW663668.1|BW663668
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|7285698|gb|AW598185.1|AW598185
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|37995866|gb|CF807455.1|CF807455
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
EST: gi|14259678|gb|BG882586.1|BG882586
EST:     GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTG                         TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT
genomic: GTCACGATCAGTTGATATAATTTCCCATTGCCTTGATGCAGGAATGTCTGgtattcttcc ... catgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttctgagttatctgttttgtcatctcattcttcttttcttcccatgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG
          ttatctgttttgtcat  CT-rich tract
                                 ttctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atatttaagcctttgaacaattgtgttttgctcatgtctataatatgtttctgagttatctgttttgtcatctcattcttcttttcttcccatgtgctagTGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG

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