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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgtcatacgtttgctgtttatttatttatttatcattcacacgtattatgatgacttgtgacagatccataaataattatgtttttaatatgttaacttatatctccggatgtgcaaataccttatgaagggtaattgatataaaattatatgtgcattttggtccaattccag

Basic information

species Glycine max
transcript GLYMA20G33060.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318792|gb|FK008004.1|FK008004
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|6070532|gb|AW099919.1|AW099919
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|209703125|gb|BW673297.1|BW673297
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|13251787|gb|BG362690.1|BG362690
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|15815853|gb|BI788128.1|BI788128
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|13180911|gb|BG352251.1|BG352251
EST:     AACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: AACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|37996783|gb|CF808372.1|CF808372
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|8282879|gb|BE020440.1|BE020440
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGAT
EST: gi|13311729|gb|BG405380.1|BG405380
EST:     CATTGGAAAATNTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|193364639|gb|FK330096.1|FK330096
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAG
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAG
EST: gi|213590485|gb|DB968077.1|DB968077
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|193355763|gb|FK319536.1|FK319536
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAG
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAG
EST: gi|213592816|gb|DB957846.1|DB957846
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|213601205|gb|DB964684.1|DB964684
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|192318791|gb|FK008003.1|FK008003
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|15663975|gb|BI701346.1|BI701346
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|209724487|gb|BW658204.1|BW658204
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|193409611|gb|FK371221.1|FK371221
EST:     ATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGTAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTAACAGATTGAG
genomic: ATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAG-AAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTA-CAGATTGAG
EST: gi|209729393|gb|BW663668.1|BW663668
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|5820250|gb|AI988456.1|AI988456
EST:     AAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: AAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|7285698|gb|AW598185.1|AW598185
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|37995866|gb|CF807455.1|CF807455
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
EST: gi|14259678|gb|BG882586.1|BG882586
EST:     CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCG                         GTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT
genomic: CATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgt ... ccaattccagGTTATGCTAGATACTGTGGGTCCAGAATTACAGATTGAGAATAAGACTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGCAAGGTTTGACTTTTCATGGGGTGATCCAGAATACCATCAAGAGACATTGGAAAATTTGAGAGTTGCTATCAAAAGTACCAAGAAACTCTGTGCGgtatacttgtcatacgtttgctgtttatttatttatttatcattcacacgtattatgatgacttgtgacagatccataaataattatgtttttaatatgttaacttatatctccggatgtgcaaataccttatgaagggtaattgatataaaattatatgtgcattttggtccaattccag

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