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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagactattcgacatggtgcatcttcttttgaggctgtgttacactttttttcttttagcattttatttaacgattaacaatttacatggatgctaacagAGGGTTCTAGAGCATTGTGATGATCTAAATACACAACAAATTATCATGGATGAAATCATGCAATCTGTCGGCACTTTAGCACAGGATCAATATGGAAATT

Basic information

species Glycine max
transcript GLYMA20G32230.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32230.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv13s0019g04640.t01 (Vitis vinifera), 3'ss of exon 7
gttagactattcgacatggtgcatcttcttttgag-gctgtgttacactttttttcttttagcattttatttaacgattaacaatttacatggatgctaacagAGGGTTCTAGAGCATTGTGATGATCTAAATACACAACAAATTATCATGGATGAAATCATGCAATCTGTCGGCACTTTAGCACAGGATCAATATGGAAATT
                    | ||    |||  || | ||| ||   ||| ||||  ||||    | ||| |  |  || | ||   |  | | || |||||||| || || || ||||||||||||  || |||||||||||| || ||||||||||||||||| |||||  | | | | ||||| || |||||||| ||||
--------------------gtatggaatttgtagtgttgtcttcatcttcttttagtttatatctatatcttccattttataaaaaattttg-tggtaacagAGAGTACTGGAACATTGTGATGATTCAAGTACACAACAAATCATTATGGATGAAATCATGCAGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33390445|gb|CA853640.1|CA853640
EST:     GGCAAGTTGTTTTACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAG                         AGGGTTCTAGAGCATTGTGATGATCTAAATACACAACAAATTATCATGGAT
genomic: GGCAAGTTGTTTTACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAGgttagactat ... atgctaacagAGGGTTCTAGAGCATTGTGATGATCTAAATACACAACAAATTATCATGGAT
EST: gi|27426832|gb|CA938352.1|CA938352
EST:     GGCAAGTTGTTTTACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAG                         AGGGTTCTAGAGCATTGTGATGATCTAAATACACAACAAATTATCATGGAT
genomic: GGCAAGTTGTTTTACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAGgttagactat ... atgctaacagAGGGTTCTAGAGCATTGTGATGATCTAAATACACAACAAATTATCATGGAT
EST: gi|193441070|gb|FK408715.1|FK408715
EST:     GGCAAGTTGTTTTACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAG                         AGGGTTCTAGAGCATTGTGAT
genomic: GGCAAGTTGTTTTACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAGgttagactat ... atgctaacagAGGGTTCTAGAGCATTGTGAT
EST: gi|16996854|gb|BM086226.1|BM086226
EST:     GGCAAGTTGTTTTACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAG                         AGGGTTCTAGAGCATTGTGATGATCTAAATACACAACAAATTATCATGGAT
genomic: GGCAAGTTGTTTTACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAGgttagactat ... atgctaacagAGGGTTCTAGAGCATTGTGATGATCTAAATACACAACAAATTATCATGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttcttttagcattttatttaacgattaacaatttacatggatgctaacagAGGGTTCTAGAGCATTGTGATGATCTAAATACACAACAAATTATCATGGATGAAATCATGCAATCTGTCGGCACTTTAGCACAGGATCAATATGGAAATT
                           gattaac  putative branch site (score: 2)
               attttatttaacgatt  TA-rich tract