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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGCATCAGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGTGCCTTGATGACTGATGTTTTTGGAAATTATGTTATACAAAAAgtataattagcttgtacaactgaatactgagtactgtcataaatatgctcttttttattgggttattgatttaagaaattcatgcttgacatgctctattgcag

Basic information

species Glycine max
transcript GLYMA20G32230.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32230.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g57390.1 (Oryza sativa), 5'ss of exon 5
AACAGCATCAGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGTGCCTTGATGACTGATGTTTTTGGAAATTATGTTATACAAAAAgtataattagcttgtacaactgaatactgagtactgtcataaatatgctcttttttattgggttattgatttaagaaattcatgcttgacatgctctattgcag----------------
||| || || |  |||||||||  ||  || ||||| |||||  ||||||| || ||  |  |||||||||||||||||||||| ||||||||||| |||||   |  |||   ||| | |  ||    |||| |   | ||| ||| | ||||||     || ||  || ||| ||  | ||  || ||  | ||| |   |                 
AACGGCTTCTGCTGAAGAGAAGGACACCATTTTTCCAGAGATTCTTCCTCAAGCACGAACTCTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAAgtg--agcagccc-tactattccatc---agtattcggaaaaaaatgatgttttttt---agtgat--atgtaaaaatgttatcatttactggttctctctaattacttgtgcttggcag

upper sequence: GLYMA20G32230.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G123537_T02 (Zea mays), 5'ss of exon 4
AACAGCATCAGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGTGCCTTGATGACTGATGTTTTTGGAAATTATGTTATACAAAAAgta--taattagcttgtacaactgaata---ctgagtactgtcataaatatgctcttttttattgggttattga----tttaagaaattcatgcttgacatgctctattgcag------------
||| || ||    ||| ||||||  | ||| |||||||||||| |||| || || ||| | ||||||||||||||||||||||| ||||||||||| || ||    ||    | | ||||   ||| |   |||  |  | |  |||  ||   | | || |||   | |||||    ||   | |  |||   || | ||     |||||              
AACTGCTTCTACTGAACAGAAGAATATGATTTTTCCTGAGATCCTTCCCCAGGCACGTACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaaccctcatttacattagaacaaatctggtttgttttttaatgatttgcgtattcattttataattgagagcttatgggagctcagtttttaaattagtgattgcttgggttttggcag

upper sequence: GLYMA20G32230.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g04640.t01 (Vitis vinifera), 5'ss of exon 5
AACAGCATCAGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGTGCCTTGATGACTGATGTTTTTGGAAATTATGTTATACAAAAAgtataattagcttgtacaactgaatactgagtactgtcataaatatgctcttttttattgggttattgatttaagaaattcatgcttgacatgctctattgcag
||| ||  |||| || || ||||  |||||||| |||||||| ||||||||| ||| | | |||||||||||||| ||||| |||||||| ||||| ||||||||   |        |||| ||   ||||||| |  ||  |||   |||   || ||   | | |  ||| |    | |||  |                  
AACTGCCACAGTGGATGAAAAGATTAAGATATTCCCTGAGATTATTCCTCATTCTCATACTTTGATGACTGATGTCTTTGGGAATTATGTCATACAGAAAgtatatccaa-----gaaacttaa---tgagtac-gctatttatacattctgaattgttacttaaattgttttact--tgcattttcag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996854|gb|BM086226.1|BM086226
EST:     ATGCTCGTGCCTTGATGACTGATGTTTTTGGAAATTATGTTATACAAAAA                         TTTTTTGAGCATGGTACAGATAGTCAAAGAAAGGAATTAGCCAGCCAACTT
genomic: ATGCTCGTGCCTTGATGACTGATGTTTTTGGAAATTATGTTATACAAAAAgtataattag ... tctattgcagTTTTTTGAGCATGGTACAGATAGTCAAAGAAAGGAATTAGCCAGCCAACTT