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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataattagcttgtacaactgaatactgagtactgtcataaatatgctcttttttattgggttattgatttaagaaattcatgcttgacatgctctattgcagTTTTTTGAGCATGGTACAGATAGTCAAAGAAAGGAATTAGCCAGCCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGA

Basic information

species Glycine max
transcript GLYMA20G32230.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32230.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv13s0019g04640.t01 (Vitis vinifera), 3'ss of exon 5
gtataattagcttgtacaactgaata-ctgagtactgtcataaatatgctcttttt---tattgggttattgatttaagaaattcatgcttgacatgctctattgcagTTTTTTGAGCATGGTACAGATAGTCAAAGAAAGGAATTAGCCAGCCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGA
                     | ||| |  || |   | || | || ||| ||| |   |  ||  || ||  ||    ||||   || || || |||    || ||||||||||||||||| ||||| ||||||||| ||| | |||||||  ||||||| || ||| |||| || || ||||| |||||||||||||||||||| |
---------------------gtatatccaagaaacttaatgagtacgctatttatacattctgaattgttactt----aaat---tgttttacttgcat--tttcagTTTTTTGAGCATGGAACAGAAAGTCAAAGACAGGCACTAGCCAGTGAACTTACTGGCCATATTTTGCCCCTAAGTCTTCAAATGTATGGTTGCAGAGTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996854|gb|BM086226.1|BM086226
EST:     ATGCTCGTGCCTTGATGACTGATGTTTTTGGAAATTATGTTATACAAAAA                         TTTTTTGAGCATGGTACAGATAGTCAAAGAAAGGAATTAGCCAGCCAACTT
genomic: ATGCTCGTGCCTTGATGACTGATGTTTTTGGAAATTATGTTATACAAAAAgtataattag ... tctattgcagTTTTTTGAGCATGGTACAGATAGTCAAAGAAAGGAATTAGCCAGCCAACTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttattgggttattgatttaagaaattcatgcttgacatgctctattgcagTTTTTTGAGCATGGTACAGATAGTCAAAGAAAGGAATTAGCCAGCCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGA
                                            ctctatt  CT-rich tract
             ttattgatttaagaaa  TA-rich tract