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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTGTGATGATCTAAATACACAACAAATTATCATGGATGAAATCATGCAATCTGTCGGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGgtgtgtatctttcagtatgtgaacattttcatatgggataggaaatgcacatcgacattagagatgcacattttatgctttggcacttctgttgtaatat...

Basic information

species Glycine max
transcript GLYMA20G32230.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32230.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G10360.1 (Arabidopsis thaliana), 5'ss of exon 8
GCATTGTGATGATCTAAATACACAACAAATTATCATGGATGAAATCATGCAATCTGTCGGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGgtgtgtatctttcagtatgtgaacattttcatatgggataggaaatgcacatcgacattagagatgcacattttatgctttggcacttctgttgtaatat
||||  ||||||| || | || ||||  || || ||||| ||||||||| | || ||| | ||| ||||||| |||||||| |||||||||||||| |||||  |  |||     |   |  || |||     |     |  |    ||||  || |      |  |   |||   ||| | |                 
GCATATTGATGATATAGAAACCCAACGGATCATTATGGAGGAAATCATGGATTCAGTCTGTACTCTAGCACAAGATCAATACGGAAATTATGTTATCCAGgtaagattctgaagcttaattgacgtttctgcttcatg-aaaatggacacactgataaagattaatcctgtttccggctgtag-----------------

upper sequence: GLYMA20G32230.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0019g04640.t01 (Vitis vinifera), 5'ss of exon 8
GCATTGTGATGATCTAAATACACAACAAATTATCATGGATGAAATCATGCAATCTGTCGGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGgtgtgtatctttc---agtatgtgaacattttcatatgggataggaaatgcacatcgacattaga-gatgcacattttatgctttggcacttctgttgtaatat-------------------------------------------------------------------------------------------
 ||||||||||||  || |||||||||||| || ||||||||||||||||| |||||  | | | | ||||| || |||||||| |||||||||||||||||   | |  |     | | | ||   |||||| | |  |||   |       ||   | ||    | | |   |||  |  | || |  |||  || | ||                                                                                             
ACATTGTGATGATTCAAGTACACAACAAATCATTATGGATGAAATCATGCAGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATTATGTTATTCAGgtacttttactaataaattttttgtttattttcttgttagatttcatgcttgaattccctttctctggtacttgtttc-ttttctgacttttcccttttgatgatctctgttttatcattattgtgttattattttacctataattttttttttacttcatttgtcccctgaggttcgttcctttgcttgtttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33390445|gb|CA853640.1|CA853640
EST:     GTGCAATAATGAAATGTGTACGTGATCAAAATGGAAACCATGTTATTCAGAAGTGTATAGAGTGTGTACCTCAAGATAAAATTCAGTTTATTGTTTCATCCTTTTATGGGCAAGTTGTTTTACTTT
genomic: GTGCAATAATGAAATGTGTACGTGATCAAAATGGAAACCATGTTATTCAGAAGTGTATAGAGTGTGTACCTCAAGATAAAATTCAGTTTATTGTTTCATCCTTTTATGGGCAAGTTGTTTTACTTT
EST: gi|27426832|gb|CA938352.1|CA938352
EST:     AATCTGTCGGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAG                         CATATTGTGGAGCATGGTAAACCACATGAACGGACTGCTATTATCAGCAAG
genomic: AATCTGTCGGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGgtgtgtatct ... tctttggtagCATATTGTGGAGCATGGTAAACCACATGAACGGACTGCTATTATCAGCAAG
EST: gi|208031192|gb|GD827578.1|GD827578
EST:     AATCTGTCGGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAG                         CATATTGTGGAGCATGGTAAACCACATGAACGGACTGCTATTATCAGCAAG
genomic: AATCTGTCGGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGgtgtgtatct ... tctttggtagCATATTGTGGAGCATGGTAAACCACATGAACGGACTGCTATTATCAGCAAG