Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGTACAGATAGTCAAAGAAAGGAATTAGCCAGCCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctttcaagctttatgttatcctattattcaccatatatgaacattaatttatgcctgactcttagaatcccatttcctcaatttttccataagatg...

Basic information

species Glycine max
transcript GLYMA20G32230.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32230.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0019g04640.t01 (Vitis vinifera), 5'ss of exon 6
GCATGGTACAGATAGTCAAAGAAAGGAATTAGCCAGCCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctt-tcaagctttatgttatcctattattcaccatatatgaacattaat-ttatgcctgactcttagaatcccat-ttcctcaatttttccataagatg-
|||||| ||||| ||||||||| ||| | |||||||  ||||||| || ||| |||| || || ||||| |||||||||||||||||||| ||||||||||| | || | ||||||||  ||  |  |||   || |||  |||    ||  | || || ||  ||||     ||       |||| |||| || |  |     
GCATGGAACAGAAAGTCAAAGACAGGCACTAGCCAGTGAACTTACTGGCCATATTTTGCCCCTAAGTCTTCAAATGTATGGTTGCAGAGTTATTCAAAAGgttctttcttaagctttacatt--ctaatttcccagcattcatg--ttttggtgttctgtctctctctctctctcaggcgcccctccatttatctactaacctt

upper sequence: GLYMA20G32230.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S96_93V6.1 (Physcomitrella patens), 5'ss of exon 6
GCATGGTACAGATAGTCAAAGAAAGGAATTAGCCAGCCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctttca-----agctttatgttatcctatt-attcaccatatatgaacattaatttatgcctgactcttagaatcccatttcctcaatttttccataagatg
||| |||||  |    || || |  ||  | || |||||  |    || |||||| |    || |||||||| ||||| ||||||||||||||||| |||||     |        | |||   |  ||   |  |||     | | ||   | ||  | |  |   |     |  | |   | | |   |||  | | ||  |  
GCACGGTACTCAGCAGCAGAGGAGAGAGCTGGCAAGCCAGTTGGTGGGGCATGTTCTGGTGCTGAGTCTGCAGATGTACGGTTGCAGAGTGATTCAGAAGgtatgacttgtggctggatttgcatggtcgagtggatttgttgttt-tggcgaatagctgagacggaaggagaacgagctggtgttc---attcctgcgtagaa--

upper sequence: GLYMA20G32230.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S96_110V6.1 (Physcomitrella patens), 5'ss of exon 6
GCATGGTACAGATAGTCAAAGAAAGGAATTAGCCAGCCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctttca-agctttat-gttatcctattattcaccatatatgaacattaatttatgcctgactcttagaatcccatttcctcaatttttccataagatg------------------------------------------------------------------
||| || ||  ||   || || |  ||  | || ||| |  |    || || ||| |    || |||||||| ||||| ||||||||||||||||| |||||     |    |||  ||  | |        || |     | |    || ||   | ||   |    ||| | | | |  |     ||||      |   |                                                                  
GCACGGCACTCATCAGCAGAGGAGAGAGCTGGCAAGCAAGTTGGAGGGACAAGTTCTGGTGCTGAGTCTGCAGATGTACGGTTGCAGAGTGATTCAGAAGgtatggcttgtggctgcattatcacggccgagttgatttgctgttgtgatgaagaga-gctgaaacggtaggagcacgtggcggtggttttcgttggatccggtcgggttgtagattttggataggataattgagcgcaacggggaggtggttgtggcgtgcgtgcag

upper sequence: GLYMA20G32230.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S35_161V6.1 (Physcomitrella patens), 5'ss of exon 2
GCATGGTACAGATAGTCAAAGAAAGGAATTAGCCAGCCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctttcaagctttatgttatcctattattcaccatatatgaacattaatttatgcctgactcttagaa-----tcccatttcctcaatttttccataagatg----------------------------------------
||| || ||  |    || || | |||  | || |||||  |    |  || ||| |  | || |||||||| ||||| ||||||||||||||||| |||||   |  ||   |||   |  |    ||  |       | |||  |  |    | |   |        ||     || || |    ||   |||  |     ||                                        
GCACGGCACTCAGCAGCAGAGGAGGGAGCTGGCGAGCCAGTTGGTGGAGCACGTTCTGACGCTGAGTCTGCAGATGTACGGTTGCAGAGTGATTCAGAAGgtaagtcccactattttcatggtgaagttggtttgttgttgtgatgaggagcggaagaacggaaggagcaagtatgtcacagtcgagcagggtttggacgcagtgagtaaacgcagttgggacgtgggatgtggtgtgcgtgcag

upper sequence: GLYMA20G32230.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S35_216V6.1 (Physcomitrella patens), 5'ss of exon 6
GCATGGTACAGATAGTCAAAGAAAGGAATTAGCCAGCCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctttcaagctttatgttatcctattattca---ccatatatgaacatta--atttatgcctgactcttagaatcccatttcctcaatttttccataagatg-----------------------------------------------------------
||| || ||  |    || || |  ||  | || | |||  |    || || ||| |   ||| |||||||| ||||| ||||||||||||||||| |||||    ||     | | ||   ||||||   | |      | | |    || |  | |     | |  |   || |     |       ||   | |  ||  ||                                                           
GCACGGGACTCAGCAGCAGAGGAGAGAGCTGGCAAACCAGTTGGTGGGGCACGTTCTGGTTCTGAGTCTGCAGATGTACGGTTGCAGAGTGATTCAGAAGgtatggttttc-ttgtgtgcattcctatggctaaagtttgtgtgttgtgatgaggagtccctacggtatacgagcacttggtggtggtgatgagtactaaaattgagcaggatctagatagggtaattggaaccaattgaaaactgttcgtgatgcgcgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193441070|gb|FK408715.1|FK408715
EST:     AGTGATTCAAAAG                         GCCTTGGAGGTGGTTGATGCGGATCAGCAGGGTCAACTGGTGTCTGAGCTC
genomic: AGTGATTCAAAAGgtgcctttca ... ttattgacagGCCTTGGAGGTGGTTGATGCGGATCAGCAGGGTCAACTGGTGTCTGAGCTC
EST: gi|16996854|gb|BM086226.1|BM086226
EST:     ATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAG                         GCCTTGGAGGTGGTTGATGCGGATCAGCAGGGTCAACTGGTGTCTGAGCTC
genomic: ATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctttca ... ttattgacagGCCTTGGAGGTGGTTGATGCGGATCAGCAGGGTCAACTGGTGTCTGAGCTC