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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAGGGAAGATTTGCTTCATCCTTACTAGATGAGTTCAAGAACAAGAAAACCAGGCCTTTTGAACTTCCAGATATCATTGATCATGTGGTTCAATTCAGgtatcaatcttgcacctccaatgttttttctagtgatatggttctggagatctgaattgataatctgtgccataatgcag

Basic information

species Glycine max
transcript GLYMA20G32230.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32230.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g04640.t01 (Vitis vinifera), 5'ss of exon 4
TAGAGGGAAGATTTGCTTCATCCTTACTAGATGAGTTCAAGAACAAGAAAACCAGGCCTTTTGAACTTCCAGATATCATTGATCATGTGGTTCAATTCAGgtatcaatcttgcacctcc--aatgtttt-ttctagtgatatggttc----tggagatctga-attgataatctgtg--ccataatgcag
| || ||||||||||| ||| ||||  |||| || ||||||||||| ||||||||| ||||||||||| | || ||  ||||||||||  || | |||||||||  || |    |   |  | || | | ||||| | ||   |  |    | ||| ||| | | |  ||||||      | |||| |||
TGGAAGGAAGATTTGCGTCAACCTTGTTAGAAGAATTCAAGAACAACAAAACCAGGTCTTTTGAACTTTCTGACATTGTTGATCATGTAATTGAGTTCAGgtatgcatataatcctgtcttagtgctgtattctacttatgaagcacaagcttgagttctaagagttttaatctcctattcttaatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996854|gb|BM086226.1|BM086226
EST:     CAGGCCTTTTGAACTTCCAGATATCATTGATCATGTGGTTCAATTCAG                         TACTGATCAGTATGGTAGCCGCTTTATTCAGCAGAAATTAGAAACAGCATC
genomic: CAGGCCTTTTGAACTTCCAGATATCATTGATCATGTGGTTCAATTCAGgtatcaatct ... cataatgcagTACTGATCAGTATGGTAGCCGCTTTATTCAGCAGAAATTAGAAACAGCATC