1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaaacagtttttaaaaccaaaaagtgaaaaggggatcaaacataccctttataaattgtttatggagtaccttgatttctcataaacccctcatttgcagAAAAGCGCATAGGGTTGTTGGTCTAATTCATACATCCTCAGGCATCCAATGAAGGTCTTGGAGACAAGAAGTCCTCCTACTGTCCCAACTTTTCCTTTTG
species | Glycine max |
transcript | GLYMA20G32230.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTATGGCAAACATATAGTTTCTCGTGTGGAGAAGCTCATAACCACTGGAG AAAAGCGCATAGGGTTGTTGGTCTAATTCATACATCCTCAGGCATCCAATGEST: gi|31473731|gb|CD415759.1|CD415759
genomic: TTATGGCAAACATATAGTTTCTCGTGTGGAGAAGCTCATAACCACTGGAGgtgagaaatg ... tcatttgcagAAAAGCGCATAGGGTTGTTGGTCTAATTCATACATCCTCAGGCATCCAATG
EST: TTATGGCAAACATATAGTTTCTCGTGTGGAGAAGCTCATAACCACTGGAG AAAAGCGCATAGGGTTGTTGGTCTAATTCATACATCCTCAGGCATCCAATGEST: gi|208054793|gb|GD850682.1|GD850682
genomic: TTATGGCAAACATATAGTTTCTCGTGTGGAGAAGCTCATAACCACTGGAGgtgagaaatg ... tcatttgcagAAAAGCGCATAGGGTTGTTGGTCTAATTCATACATCCTCAGGCATCCAATG
EST: TTATGGCAAACATATAGTTTCTCGTGTGGAGAAGCTCATAACCACTGGAG AAAAGCGCATAGGGTTGTTGGTCTAATTCATACATCCTCAGGCATCCAATGEST: gi|207840572|gb|GD812249.1|GD812249
genomic: TTATGGCAAACATATAGTTTCTCGTGTGGAGAAGCTCATAACCACTGGAGgtgagaaatg ... tcatttgcagAAAAGCGCATAGGGTTGTTGGTCTAATTCATACATCCTCAGGCATCCAATG
EST: TTATGGCAAACATATAGTTTCTCGTGTGGAGAAGCTCATAACCACTGGAG AAAAGCGCATAGGGTTGTTGGTCTAATTCATACATCCTCAGGCATCCAATG
genomic: TTATGGCAAACATATAGTTTCTCGTGTGGAGAAGCTCATAACCACTGGAGgtgagaaatg ... tcatttgcagAAAAGCGCATAGGGTTGTTGGTCTAATTCATACATCCTCAGGCATCCAATG
cctttataaattgtttatggagtaccttgatttctcataaacccctcatttgcagAAAAGCGCATAGGGTTGTTGGTCTAATTCATACATCCTCAGGCATCCAATGAAGGTCTTGGAGACAAGAAGTCCTCCTACTGTCCCAACTTTTCCTTTTG
ccttgat putative branch site (score: 5)
cccctcattt putative PPT
ataaattgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacagtttttaaaaccaaaaagtgaaaaggggatcaaacataccctttataaattgtttatggagtaccttgatttctcataaacccctcatttgcagAAAAGCGCATAGGGTTGTTGGTCTAATTCATACATCCTCAGGCATCCAATGAAGGTCTTGGAGACAAGAAGTCCTCCTACTGTCCCAACTTTTCCTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - -accaaaa
- - - - - - - - - - - - - - - - - -tcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacccc