1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaacttttatttccttttcattaatctctgcagctttctttttttttttttgccttcaaagaaaatcttttttttttctcgtagtgatttttttgtcgaaatgtggaaaattgacgtgttgatttgcacgtgaattgtcggaagtggttgtcgtgtcttttctcgataatgggtttctcaattttgcttgcagAGAGGATCGGATTGCGGGTTTCGTTTGTGTTGATGTGTGAAGGTTGCCTTTGAGCTTGTGGAGTCTTAG
species | Glycine max |
transcript | GLYMA20G32230.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCATTTTTCTTTTTCAGCTTCATCATCCTCACAACTCCATTCAGAACGTG AGAGGATCGGATTGCGGGTTTCGTTTGTGTTGATGTGTGAAGGTTGCCTTTEST: gi|208268222|gb|GE069343.1|GE069343
genomic: GCATTTTTCTTTTTCAGCTTCATCATCCTCACAACTCCATTCAGAACGTGgtaactttta ... ttgcttgcagAGAGGATCGGATTGCGGGTTTCGTTTGTGTTGATGTGTGAAGGTTGCCTTT
EST: GCATTTTTCTTTTTCAGCTTCATCATCCTCACAACTCCATTCAGAACGTG AGAGGATCGGATTGCGGGTTTCGTTTGTGTTGATGTGTGAAGGTTGCCTTTEST: gi|208045418|gb|GD841170.1|GD841170
genomic: GCATTTTTCTTTTTCAGCTTCATCATCCTCACAACTCCATTCAGAACGTGgtaactttta ... ttgcttgcagAGAGGATCGGATTGCGGGTTTCGTTTGTGTTGATGTGTGAAGGTTGCCTTT
EST: GCATTTTTCTTTTTCAGCTTCATCATCCTCACAACTCCATTCAGAACGTG AGAGGATCGGATTGCGGGTTTCGTTTGTGTTGATGTGTGAAGGTTGCCTTTEST: gi|208098449|gb|GD894786.1|GD894786
genomic: GCATTTTTCTTTTTCAGCTTCATCATCCTCACAACTCCATTCAGAACGTGgtaactttta ... ttgcttgcagAGAGGATCGGATTGCGGGTTTCGTTTGTGTTGATGTGTGAAGGTTGCCTTT
EST: GCATTTTTCTTTTTCAGCTTCATCATCCTCACAACTCCATTCAGAACGTG AGAGGATCGGATTGCGGGTTTCGTTTGTGTTGATGTGTGAAGGTTGCCTTT
genomic: GCATTTTTCTTTTTCAGCTTCATCATCCTCACAACTCCATTCAGAACGTGgtaactttta ... ttgcttgcagAGAGGATCGGATTGCGGGTTTCGTTTGTGTTGATGTGTGAAGGTTGCCTTT
cggaagtggttgtcgtgtcttttctcgataatgggtttctcaattttgcttgcagAGAGGATCGGATTGCGGGTTTCGTTTGTGTTGATGTGTGAAGGTTGCCTTTGAGCTTGTGGAGTCTTAG
ttttgctt CT-rich tract
tcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttttatttccttttcattaatctctgcagctttctttttttttttttgccttcaaagaaaatcttttttttttctcgtagtgatttttttgtcgaaatgtggaaaattgacgtgttgatttgcacgtgaattgtcggaagtggttgtcgtgtcttttctcgataatgggtttctcaattttgcttgcagAGAGGATCGGATTGCGGGTTTCGTTTGTGTTGATGTGTGAAGGTTGCCTTTGAGCTTGTGGAGTCTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG