1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatttcctttttccacttgctaaccttgttcagcagtcttctttatagtagagcggttgagtgaaaatgcattttgatagtcattaatgaaaaa...
species | Glycine max |
transcript | GLYMA19G36580.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGCATGGCATCAACCTACAAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGEST: gi|193584502|gb|FK538956.1|FK538956
genomic: GAGCATGGCATCAACCTACAA-TCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAG
EST: AAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|209729664|gb|BW669764.1|BW669764
genomic: AAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|209700959|gb|BW661326.1|BW661326
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|209700621|gb|BW670339.1|BW670339
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|31465431|gb|CD407459.1|CD407459
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|22928652|gb|BU545791.1|BU545791
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|209726659|gb|BW666578.1|BW666578
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|208123852|gb|GD925902.1|GD925902
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: AATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|151407666|gb|EV277481.1|EV277481
genomic: AATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|192316336|gb|FK011681.1|FK011681
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|193404806|gb|FK373317.1|FK373317
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: GGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|26060133|gb|CA803047.1|CA803047
genomic: GGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGAATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAEST: gi|207822812|gb|GD794047.1|GD794047
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGA-TGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATEST: gi|214009020|gb|DB987099.1|DB987099
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGAT
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|298188879|gb|HO035572.1|HO035572
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|18735168|gb|BM528606.1|BM528606
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|193436731|gb|FK399532.1|FK399532
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: GGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|209726442|gb|BW658049.1|BW658049
genomic: GGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|192333001|gb|FK024650.1|FK024650
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|207800241|gb|GD773286.1|GD773286
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: GGCCTCCTGAGTATTGG GTTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAEST: gi|192296879|gb|FG990240.1|FG990240
genomic: GGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagG-TTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGA
EST: TGAGCATAGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGA-EST: gi|208064329|gb|GD866711.1|GD866711
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGEST: gi|192317325|gb|FK010556.1|FK010556
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTG
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|151395109|gb|EV264980.1|EV264980
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|193408918|gb|FK372824.1|FK372824
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: ATGGCATCTAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|209711753|gb|BW676892.1|BW676892
genomic: ATGGCATC-AACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|209711463|gb|BW665215.1|BW665215
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAEST: gi|193362479|gb|FK325317.1|FK325317
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATEST: gi|193337950|gb|FK305089.1|FK305089
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAAT
EST: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTT
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatttcctttttccacttgctaaccttgttcagcagtcttctttatagtagagcggttgagtgaaaatgcattttgatagtcattaatgaaaaa
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