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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaatcccgttaaagttttaagcccaatctttagtagaactttacatgaaaacaaattttaacttcatcttcattttttatattttataaaatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAGACCACATTCGGTTTTTTGAGGGGCTTTGAGCTAATAATTTATCTTGTA

Basic information

species Glycine max
transcript GLYMA19G36580.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193417877|gb|FK384297.1|FK384297
EST:     GAGCATGGCATCAACCTACAAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAG
genomic: GAGCATGGCATCAACCTACAA-TCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAG
EST: gi|193584502|gb|FK538956.1|FK538956
EST:     AAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: AAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|209729664|gb|BW669764.1|BW669764
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|209700959|gb|BW661326.1|BW661326
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|209700621|gb|BW670339.1|BW670339
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|31465431|gb|CD407459.1|CD407459
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|22928652|gb|BU545791.1|BU545791
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|209726659|gb|BW666578.1|BW666578
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|208123852|gb|GD925902.1|GD925902
EST:     AATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: AATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|151407666|gb|EV277481.1|EV277481
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|192316336|gb|FK011681.1|FK011681
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|193404806|gb|FK373317.1|FK373317
EST:     GGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: GGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|26060133|gb|CA803047.1|CA803047
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGAATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGA-TGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGA
EST: gi|207822812|gb|GD794047.1|GD794047
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGAT
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGAT
EST: gi|214009020|gb|DB987099.1|DB987099
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|298188879|gb|HO035572.1|HO035572
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|18735168|gb|BM528606.1|BM528606
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|193436731|gb|FK399532.1|FK399532
EST:     GGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: GGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|209726442|gb|BW658049.1|BW658049
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|192333001|gb|FK024650.1|FK024650
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|207800241|gb|GD773286.1|GD773286
EST:     GGCCTCCTGAGTATTGG                         GTTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGA
genomic: GGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagG-TTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGA
EST: gi|192296879|gb|FG990240.1|FG990240
EST:     TGAGCATAGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGA-
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|208064329|gb|GD866711.1|GD866711
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTG
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTG
EST: gi|192317325|gb|FK010556.1|FK010556
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|151395109|gb|EV264980.1|EV264980
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|193408918|gb|FK372824.1|FK372824
EST:     ATGGCATCTAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: ATGGCATC-AACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|209711753|gb|BW676892.1|BW676892
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|209711463|gb|BW665215.1|BW665215
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAA
EST: gi|193362479|gb|FK325317.1|FK325317
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAAT
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAAT
EST: gi|193337950|gb|FK305089.1|FK305089
EST:     TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGG                         GTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTT
genomic: TGAGCATGGCATCAACCTACAATCTAAAGATGCGGCCTCCTGAGTATTGGgtatgaaatt ... aatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaaaacaaattttaacttcatcttcattttttatattttataaaatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAGACCACATTCGGTTTTTTGAGGGGCTTTGAGCTAATAATTTATCTTGTA
           ttttaac  putative branch site (score: 2)
        aaattttaacttcatc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agaatcccgttaaagttttaagcccaatctttagtagaactttacatgaaaacaaattttaacttcatcttcattttttatattttataaaatattttagGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAGACCACATTCGGTTTTTTGAGGGGCTTTGAGCTAATAATTTATCTTGTA

- - - - - - - - - - - cccaatc
- - - - - - - - - - - - - - - - - - - - - tacatga
- - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa